Conserved role of spike S2 domain N-glycosylation across betacoronaviruses

Abstract Besides acting as an immunological shield, the N-glycans of SARS-CoV-2 are also critical for viral life cycle. As the S2 subunit of spike is highly conserved across betacoronaviruses, we determined the functional significance of the five ‘stem N-glycans’ located in S2 between N1098-N1194. S...

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Main Authors: Qi Yang, Anju Kelkar, Balaji Manicassamy, Sriram Neelamegham
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:npj Viruses
Online Access:https://doi.org/10.1038/s44298-024-00085-7
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author Qi Yang
Anju Kelkar
Balaji Manicassamy
Sriram Neelamegham
author_facet Qi Yang
Anju Kelkar
Balaji Manicassamy
Sriram Neelamegham
author_sort Qi Yang
collection DOAJ
description Abstract Besides acting as an immunological shield, the N-glycans of SARS-CoV-2 are also critical for viral life cycle. As the S2 subunit of spike is highly conserved across betacoronaviruses, we determined the functional significance of the five ‘stem N-glycans’ located in S2 between N1098-N1194. Studies were performed with 31 Asn-to-Gln mutants, betacoronavirus virus-like particles and single-cycle viral replicons. Deletions of stem N-glycans enhanced S1 shedding from trimeric spike, reduced ACE2 binding and abolished syncytia formation. When three or more N-glycans were deleted, spike expression on cell surface and incorporation into virions was both reduced. Viral entry function was progressively lost upon deleting the N1098 glycan in combination with additional glycosite modifications. In addition to SARS-CoV-2, deleting stem N-glycans in SARS-CoV and MERS-CoV spike also prevented viral entry into target cells. These data suggest multiple functional roles for the stem N-glycans, and evolutionarily conserved properties for these complex carbohydrates across human betacoronaviruses.
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spelling doaj-art-a7f791113284478c83d7101814d4481d2025-01-26T12:18:58ZengNature Portfolionpj Viruses2948-17672025-01-013111110.1038/s44298-024-00085-7Conserved role of spike S2 domain N-glycosylation across betacoronavirusesQi Yang0Anju Kelkar1Balaji Manicassamy2Sriram Neelamegham3Chemical & Biological Engineering, State University of New YorkChemical & Biological Engineering, State University of New YorkMicrobiology and Immunology, University of IowaChemical & Biological Engineering, State University of New YorkAbstract Besides acting as an immunological shield, the N-glycans of SARS-CoV-2 are also critical for viral life cycle. As the S2 subunit of spike is highly conserved across betacoronaviruses, we determined the functional significance of the five ‘stem N-glycans’ located in S2 between N1098-N1194. Studies were performed with 31 Asn-to-Gln mutants, betacoronavirus virus-like particles and single-cycle viral replicons. Deletions of stem N-glycans enhanced S1 shedding from trimeric spike, reduced ACE2 binding and abolished syncytia formation. When three or more N-glycans were deleted, spike expression on cell surface and incorporation into virions was both reduced. Viral entry function was progressively lost upon deleting the N1098 glycan in combination with additional glycosite modifications. In addition to SARS-CoV-2, deleting stem N-glycans in SARS-CoV and MERS-CoV spike also prevented viral entry into target cells. These data suggest multiple functional roles for the stem N-glycans, and evolutionarily conserved properties for these complex carbohydrates across human betacoronaviruses.https://doi.org/10.1038/s44298-024-00085-7
spellingShingle Qi Yang
Anju Kelkar
Balaji Manicassamy
Sriram Neelamegham
Conserved role of spike S2 domain N-glycosylation across betacoronaviruses
npj Viruses
title Conserved role of spike S2 domain N-glycosylation across betacoronaviruses
title_full Conserved role of spike S2 domain N-glycosylation across betacoronaviruses
title_fullStr Conserved role of spike S2 domain N-glycosylation across betacoronaviruses
title_full_unstemmed Conserved role of spike S2 domain N-glycosylation across betacoronaviruses
title_short Conserved role of spike S2 domain N-glycosylation across betacoronaviruses
title_sort conserved role of spike s2 domain n glycosylation across betacoronaviruses
url https://doi.org/10.1038/s44298-024-00085-7
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AT anjukelkar conservedroleofspikes2domainnglycosylationacrossbetacoronaviruses
AT balajimanicassamy conservedroleofspikes2domainnglycosylationacrossbetacoronaviruses
AT sriramneelamegham conservedroleofspikes2domainnglycosylationacrossbetacoronaviruses