BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows

BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows

Abstract Background The Joint Programming Initiative on Antimicrobial Resistance (JPIAMR) networks ‘Seq4AMR’ and ‘B2B2B AMR Dx’ were established to promote collaboration between microbial whole genome sequencing (WGS) and antimicrobial resistance (AMR) stakeholders. A key topic discussed was the fre...

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Bibliographic Details
Main Authors: Nikolaos Strepis, Dennis Dollee, Donny Vrins, Kevin Vanneste, Bert Bogaerts, Catherine Carrillo, Amrita Bharat, Kristy Horan, Norelle L. Sherry, Torsten Seemann, Benjamin P. Howden, Saskia Hiltemann, Leonid Chindelevitch, Andrew P. Stubbs, John P. Hays
Format: Article
Language:English
Published: BMC 2025-01-01
Series:BMC Genomics
Subjects:
Antimicrobial resistance
Microbial whole genome sequencing
Benchmarking
Galaxy
Workflows
Online Access:https://doi.org/10.1186/s12864-024-11158-5
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https://doi.org/10.1186/s12864-024-11158-5

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