Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

Abstract Background Antimicrobial resistant (AMR) pathogens represent urgent threats to human health, and their surveillance is of paramount importance. Metagenomic next-generation sequencing (mNGS) has revolutionized such efforts, but remains challenging due to the lack of open-access bioinformatic...

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Main Authors: Dan Lu, Katrina L. Kalantar, Abigail L. Glascock, Victoria T. Chu, Estella S. Guerrero, Nina Bernick, Xochitl Butcher, Kirsty Ewing, Elizabeth Fahsbender, Olivia Holmes, Erin Hoops, Ann E. Jones, Ryan Lim, Suzette McCanny, Lucia Reynoso, Karyna Rosario, Jennifer Tang, Omar Valenzuela, Peter M. Mourani, Amy J. Pickering, Amogelang R. Raphenya, Brian P. Alcock, Andrew G. McArthur, Charles R. Langelier
Format: Article
Language:English
Published: BMC 2025-05-01
Series:Genome Medicine
Subjects:
Antimicrobial resistance
Metagenomics
Whole-genome sequencing
Chan Zuckerberg ID
CZ ID
Online Access:https://doi.org/10.1186/s13073-025-01480-2
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https://doi.org/10.1186/s13073-025-01480-2

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