Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea
Abstract Objectives The data were collected to obtain the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from the rhizosphere of Sasamorpha in a heavy metal-contaminated coal mine in Hongcheon, Republic of Korea. The objective was to explore the strain's genetic po...
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2025-01-01
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| Online Access: | https://doi.org/10.1186/s12863-025-01300-x |
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| author | Min-Kyu Park Yeong-Jun Park Myung-Suk Kang Min-Ha Kim Soo-Young Kim Jae-Ho Shin |
| author_facet | Min-Kyu Park Yeong-Jun Park Myung-Suk Kang Min-Ha Kim Soo-Young Kim Jae-Ho Shin |
| author_sort | Min-Kyu Park |
| collection | DOAJ |
| description | Abstract Objectives The data were collected to obtain the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from the rhizosphere of Sasamorpha in a heavy metal-contaminated coal mine in Hongcheon, Republic of Korea. The objective was to explore the strain's genetic potential for plant growth promotion and heavy metal resistance, particularly arsenate and copper. The aim focused on identifying microbes that enhance plant growth in metal-tolerant environments and evaluating the strain's bioremediation and agricultural uses. This study sought key genes for bioremediation and agricultural applications in contaminated soils, aiding sustainable management and biotechnology. Data description We report the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from a coal mine in Hongcheon, Republic of Korea. The genome contains a chromosome (4,403,796 bp) and a plasmid (74,326 bp, named pMK-1) with 286-fold coverage. Genome annotation identified 4,209 genes, including 3,926 protein-coding genes, 51 tRNA genes, and 15 rRNA genes, with a G + C content of 66.1%. Functional analysis revealed genes related to plant growth promotion and heavy metal resistance, such as arsenate (arsR, arsC) and copper (copC, copD) resistance genes. Genes involved in auxin biosynthesis suggest potential agricultural applications. The genome and plasmid are available in GenBank (CP041198.1, CP014497.1), offering insights into bioremediation and plant growth in metal-contaminated environments. |
| format | Article |
| id | doaj-art-c2eef7fac6724c34a9c68973719291c4 |
| institution | Kabale University |
| issn | 2730-6844 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomic Data |
| spelling | doaj-art-c2eef7fac6724c34a9c68973719291c42025-01-19T12:40:30ZengBMCBMC Genomic Data2730-68442025-01-012611410.1186/s12863-025-01300-xComplete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of KoreaMin-Kyu Park0Yeong-Jun Park1Myung-Suk Kang2Min-Ha Kim3Soo-Young Kim4Jae-Ho Shin5Department of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National UniversityDepartment of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National UniversityNational Institute of Biological ResourcesNational Institute of Biological ResourcesNational Institute of Biological ResourcesDepartment of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National UniversityAbstract Objectives The data were collected to obtain the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from the rhizosphere of Sasamorpha in a heavy metal-contaminated coal mine in Hongcheon, Republic of Korea. The objective was to explore the strain's genetic potential for plant growth promotion and heavy metal resistance, particularly arsenate and copper. The aim focused on identifying microbes that enhance plant growth in metal-tolerant environments and evaluating the strain's bioremediation and agricultural uses. This study sought key genes for bioremediation and agricultural applications in contaminated soils, aiding sustainable management and biotechnology. Data description We report the complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770, isolated from a coal mine in Hongcheon, Republic of Korea. The genome contains a chromosome (4,403,796 bp) and a plasmid (74,326 bp, named pMK-1) with 286-fold coverage. Genome annotation identified 4,209 genes, including 3,926 protein-coding genes, 51 tRNA genes, and 15 rRNA genes, with a G + C content of 66.1%. Functional analysis revealed genes related to plant growth promotion and heavy metal resistance, such as arsenate (arsR, arsC) and copper (copC, copD) resistance genes. Genes involved in auxin biosynthesis suggest potential agricultural applications. The genome and plasmid are available in GenBank (CP041198.1, CP014497.1), offering insights into bioremediation and plant growth in metal-contaminated environments.https://doi.org/10.1186/s12863-025-01300-xWhole genome sequencingPseudarthrobacter sp. NIBRBAC000502770Heavy metal resistanceDe novo assembly |
| spellingShingle | Min-Kyu Park Yeong-Jun Park Myung-Suk Kang Min-Ha Kim Soo-Young Kim Jae-Ho Shin Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea BMC Genomic Data Whole genome sequencing Pseudarthrobacter sp. NIBRBAC000502770 Heavy metal resistance De novo assembly |
| title | Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea |
| title_full | Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea |
| title_fullStr | Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea |
| title_full_unstemmed | Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea |
| title_short | Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea |
| title_sort | complete genome sequence of pseudarthrobacter sp nibrbac000502770 from coal mine of hongcheon on republic of korea |
| topic | Whole genome sequencing Pseudarthrobacter sp. NIBRBAC000502770 Heavy metal resistance De novo assembly |
| url | https://doi.org/10.1186/s12863-025-01300-x |
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