mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms

mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms

We developed a python package called mbctools, designed to offer a cross-platform tool for processing amplicon data from various organisms in the context of metabarcoding studies. It can handle the most common tasks in metabarcoding pipelines such as paired-end merging, primer trimming, quality filt...

Full description

Saved in:
Bibliographic Details
Main Authors: Barnabé, Christian, Sempéré, Guilhem, Manzanilla, Vincent, Millan, Joel Moo, Amblard-Rambert, Antoine, Waleckx, Etienne
Format: Article
Language:English
Published: Peer Community In 2024-12-01
Series:Peer Community Journal
Subjects:
metabarcoding
amplicon
reproducibility
VSEARCH
pipeline
Online Access:https://peercommunityjournal.org/articles/10.24072/pcjournal.501/
Tags: Add Tag
No Tags, Be the first to tag this record!

Similar Items

Similar Items