Accurate protein-ligand binding free energy estimation using QM/MM on multi-conformers predicted from classical mining minima

Abstract Accurate prediction of binding free energy is crucial for the rational design of drug candidates and understanding protein-ligand interactions. To address this, we have developed four protocols that combine QM/MM calculations and the mining minima (M2) method, tested on 9 targets and 203 li...

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Bibliographic Details
Main Authors: Farzad Molani, Art E. Cho
Format: Article
Language:English
Published: Nature Portfolio 2024-10-01
Series:Communications Chemistry
Online Access:https://doi.org/10.1038/s42004-024-01328-7
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