Using Gap Visualization to Navigate Multivariate Metabarcode Data, Select Primer Pairs, and Enhance Reference Data Quality
ABSTRACT The success of amplicon sequencing studies of environmental DNA (eDNA) depends on the choice of primer pairs used to select taxa‐specific regions of DNA for amplification then sequencing to characterize sample composition. This paper presents practical methods to visualize the extent to whi...
Saved in:
Main Authors: | Xin‐Yi Chua, Louise Ord, Stephen J. Bent, David Lovell, Annette McGrath |
---|---|
Format: | Article |
Language: | English |
Published: |
Wiley
2024-11-01
|
Series: | Environmental DNA |
Subjects: | |
Online Access: | https://doi.org/10.1002/edn3.597 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
by: Barnabé, Christian, et al.
Published: (2024-12-01) -
Revealing Mucilage Event-Linked Community Composition in the Sea of Marmara from eDNA Metabarcoding Data
by: Melek İşinibilir, et al.
Published: (2024-03-01) -
Fish Gut Metabarcoding Detects Diets and Parasites Simultaneously
by: Dilli Prasad Rijal, et al.
Published: (2024-11-01) -
Environmental DNA metabarcoding shows potential for monitoring meiofauna and marine nematodes diversity in mangrove ecosystems in China
by: Mingcheng Hu, et al.
Published: (2025-01-01) -
eDNA Metabarcoding Analysis of Bony Fish Identification in Coastal Water of Gulf of Maine Using Nested Polymerase Chain Reaction of 12S rRNA Universal Primers
by: Bo‐Young Lee, et al.
Published: (2024-11-01)