The unresolved struggle of 16S rRNA amplicon sequencing: a benchmarking analysis of clustering and denoising methods

Abstract Background Although 16S rRNA gene amplicon sequencing has become an indispensable method for microbiome studies, this analysis is not error-free, and remains prone to several biases and errors. Numerous algorithms have been developed to eliminate these errors and consolidate the output into...

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Bibliographic Details
Main Authors: Mohamed Fares, Engy K. Tharwat, Ilse Cleenwerck, Pieter Monsieurs, Rob Van Houdt, Peter Vandamme, Mohamed El-Hadidi, Mohamed Mysara
Format: Article
Language:English
Published: BMC 2025-05-01
Series:Environmental Microbiome
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Online Access:https://doi.org/10.1186/s40793-025-00705-6
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