GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES
Evaluation of gene expression efficiency in different organisms is a vital task of modern biology. Microorganisms that feed on humans and pets are particularly interesting. In this work, bioinformatical analysis of 62 Mycoplasma strains is performed. It has been shown that translation efficiency in...
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| Format: | Article |
| Language: | English |
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Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders
2015-01-01
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| Series: | Вавиловский журнал генетики и селекции |
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| Online Access: | https://vavilov.elpub.ru/jour/article/view/188 |
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| author | V. S. Sokolov V. A. Likhoshvai Yu. G. Matushkun |
| author_facet | V. S. Sokolov V. A. Likhoshvai Yu. G. Matushkun |
| author_sort | V. S. Sokolov |
| collection | DOAJ |
| description | Evaluation of gene expression efficiency in different organisms is a vital task of modern biology. Microorganisms that feed on humans and pets are particularly interesting. In this work, bioinformatical analysis of 62 Mycoplasma strains is performed. It has been shown that translation efficiency in these organisms depends on the number of potential secondary structures in genes and does not depend on codon compositions. Several species with low concentrations of local inverted repeats in genes have been found. Phylogenetic analysis shows that this feature may be associated with their environment. High concentrations of local inverted repeats, not typical of other Mycoplasma species, have been found in the translation start regions of M. haemofelis genes. |
| format | Article |
| id | doaj-art-5b6ebdc1d2d24671872ff2cb0c2d93ee |
| institution | Kabale University |
| issn | 2500-3259 |
| language | English |
| publishDate | 2015-01-01 |
| publisher | Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders |
| record_format | Article |
| series | Вавиловский журнал генетики и селекции |
| spelling | doaj-art-5b6ebdc1d2d24671872ff2cb0c2d93ee2025-02-01T09:58:00ZengSiberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and BreedersВавиловский журнал генетики и селекции2500-32592015-01-01174/1639650172GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIESV. S. Sokolov0V. A. Likhoshvai1Yu. G. Matushkun2Institute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaEvaluation of gene expression efficiency in different organisms is a vital task of modern biology. Microorganisms that feed on humans and pets are particularly interesting. In this work, bioinformatical analysis of 62 Mycoplasma strains is performed. It has been shown that translation efficiency in these organisms depends on the number of potential secondary structures in genes and does not depend on codon compositions. Several species with low concentrations of local inverted repeats in genes have been found. Phylogenetic analysis shows that this feature may be associated with their environment. High concentrations of local inverted repeats, not typical of other Mycoplasma species, have been found in the translation start regions of M. haemofelis genes.https://vavilov.elpub.ru/jour/article/view/188mycoplasmacodon frequenciessecondary structurestranslation efficiency |
| spellingShingle | V. S. Sokolov V. A. Likhoshvai Yu. G. Matushkun GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES Вавиловский журнал генетики и селекции mycoplasma codon frequencies secondary structures translation efficiency |
| title | GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES |
| title_full | GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES |
| title_fullStr | GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES |
| title_full_unstemmed | GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES |
| title_short | GENE EXPRESSION AND mRNA SECONDARY STRUCTURES IN DIFFERENT Mycoplasma SPECIES |
| title_sort | gene expression and mrna secondary structures in different mycoplasma species |
| topic | mycoplasma codon frequencies secondary structures translation efficiency |
| url | https://vavilov.elpub.ru/jour/article/view/188 |
| work_keys_str_mv | AT vssokolov geneexpressionandmrnasecondarystructuresindifferentmycoplasmaspecies AT valikhoshvai geneexpressionandmrnasecondarystructuresindifferentmycoplasmaspecies AT yugmatushkun geneexpressionandmrnasecondarystructuresindifferentmycoplasmaspecies |