Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ
Anadara kagoshimensis is a bivalve inhabiting coastal seafloors and has long been commercially harvested as a fishery resource. In Ariake Bay, a major production area for A. kagoshimensis in Japan, the catch has significantly declined due to marine environmental degradation, including seasonal oxyge...
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| Language: | English |
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Elsevier
2025-04-01
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| Series: | Data in Brief |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340925000733 |
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| author | Kaito Hatano Ryo Orita Kei Kimura Yukio Nagano Nobuo Suzuki |
| author_facet | Kaito Hatano Ryo Orita Kei Kimura Yukio Nagano Nobuo Suzuki |
| author_sort | Kaito Hatano |
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| description | Anadara kagoshimensis is a bivalve inhabiting coastal seafloors and has long been commercially harvested as a fishery resource. In Ariake Bay, a major production area for A. kagoshimensis in Japan, the catch has significantly declined due to marine environmental degradation, including seasonal oxygen depletion in bottom waters. This article presents the transcriptome dataset of gill tissues from A. kagoshimensis under anoxic and normoxic conditions. Anoxic treatment resulted in 894 upregulated and 903 downregulated deferentially expressed genes (Padj < 0.05). The expression of HIF-1α, a key regulator of the hypoxia responses, and genes associated with anaerobic metabolism was upregulated, while genes related to aerobic metabolism and hemoglobin expression showed a notable decrease. These RNA-seq data offer valuable insights into the adaptation mechanisms of A. kagoshimensis to anoxic environments and are accessible from the National Center for Biotechnology Information (NCBI) database under BioProject accession number PRJDB19614. |
| format | Article |
| id | doaj-art-404c1c1e61e74180abd92468f6863d98 |
| institution | Kabale University |
| issn | 2352-3409 |
| language | English |
| publishDate | 2025-04-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-404c1c1e61e74180abd92468f6863d982025-02-06T05:11:58ZengElsevierData in Brief2352-34092025-04-0159111341Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJKaito Hatano0Ryo Orita1Kei Kimura2Yukio Nagano3Nobuo Suzuki4Noto Marine Laboratory, Institute of Nature and Environmental Technology, Kanazawa University, Noto-cho, Ishikawa 927-0553, JapanFaculty of Agriculture, Saga University, 1 Honjo-machi, Saga 840-8502, Japan; Corresponding author.Faculty of Agriculture, Saga University, 1 Honjo-machi, Saga 840-8502, JapanAnalytical Research Center for Experimental Sciences, Saga University, 1 Honjo-machi, Saga 840-8502, JapanNoto Marine Laboratory, Institute of Nature and Environmental Technology, Kanazawa University, Noto-cho, Ishikawa 927-0553, JapanAnadara kagoshimensis is a bivalve inhabiting coastal seafloors and has long been commercially harvested as a fishery resource. In Ariake Bay, a major production area for A. kagoshimensis in Japan, the catch has significantly declined due to marine environmental degradation, including seasonal oxygen depletion in bottom waters. This article presents the transcriptome dataset of gill tissues from A. kagoshimensis under anoxic and normoxic conditions. Anoxic treatment resulted in 894 upregulated and 903 downregulated deferentially expressed genes (Padj < 0.05). The expression of HIF-1α, a key regulator of the hypoxia responses, and genes associated with anaerobic metabolism was upregulated, while genes related to aerobic metabolism and hemoglobin expression showed a notable decrease. These RNA-seq data offer valuable insights into the adaptation mechanisms of A. kagoshimensis to anoxic environments and are accessible from the National Center for Biotechnology Information (NCBI) database under BioProject accession number PRJDB19614.http://www.sciencedirect.com/science/article/pii/S2352340925000733Anaerobic metabolismBivalvede novo RNA-seqHemoglobinHIF-1αMarine hypoxia |
| spellingShingle | Kaito Hatano Ryo Orita Kei Kimura Yukio Nagano Nobuo Suzuki Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ Data in Brief Anaerobic metabolism Bivalve de novo RNA-seq Hemoglobin HIF-1α Marine hypoxia |
| title | Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ |
| title_full | Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ |
| title_fullStr | Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ |
| title_full_unstemmed | Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ |
| title_short | Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ |
| title_sort | gene expression dataset of the blood clam anadara kagoshimensis in relation to anoxic stressddbj |
| topic | Anaerobic metabolism Bivalve de novo RNA-seq Hemoglobin HIF-1α Marine hypoxia |
| url | http://www.sciencedirect.com/science/article/pii/S2352340925000733 |
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