Enhanced sampling of protein conformational changes via true reaction coordinates from energy relaxation

Abstract The bottleneck in enhanced sampling lies in finding collective variables that effectively accelerate protein conformational changes; true reaction coordinates that accurately predict the committor are the well-recognized optimal choice. However, identifying them requires unbiased natural re...

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Bibliographic Details
Main Authors: Huiyu Li, Ao Ma
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Nature Communications
Online Access:https://doi.org/10.1038/s41467-025-55983-y
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