rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER
Six regulatory SNPs (single nucleotide polymorphisms) of two human APC and MLH1 genes (rs75996864, rs76241113, rs78037487, rs80112297, rs80313086 and rs1800734) were evaluated by the previously developed rSNP_Guide method to compute the significance of the changes for binding of the SNP region with...
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| Format: | Article |
| Language: | English |
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Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders
2015-01-01
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| Series: | Вавиловский журнал генетики и селекции |
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| Online Access: | https://vavilov.elpub.ru/jour/article/view/182 |
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| author | D. A. Rasskazov E. V. Antontseva L. O. Bryzgalov M. Yu. Matveeva E. V. Kashina P. M. Ponomarenko G. V. Orlova M. P. Ponomarenko D. A. Afonnikov T. I. Merkulova |
| author_facet | D. A. Rasskazov E. V. Antontseva L. O. Bryzgalov M. Yu. Matveeva E. V. Kashina P. M. Ponomarenko G. V. Orlova M. P. Ponomarenko D. A. Afonnikov T. I. Merkulova |
| author_sort | D. A. Rasskazov |
| collection | DOAJ |
| description | Six regulatory SNPs (single nucleotide polymorphisms) of two human APC and MLH1 genes (rs75996864, rs76241113, rs78037487, rs80112297, rs80313086 and rs1800734) were evaluated by the previously developed rSNP_Guide method to compute the significance of the changes for binding of the SNP region with 40 transcription factors. For each SNP, all analyzed proteins were ranged according to the significance of the changes for protein binding to the alleles evaluated by Student’s t-test. We found that rs75996864, rs76241113, rs78037487, rs80112297, and rs80313086 of APC, as well as rs1800734 of MLH1 in humans concerned to the greatest extent the binding of transcription factors NF-Y, NFkB, c-Myb, RAR, YY-1, and Sp-1, which are known to be involved in colon cancer development. Our results substantiate investigation of associations of rs75996864, rs76241113, rs78037487, rs80112297, and rs80313086 in the APC gene with colon cancer by using commonly accepted medical and genetic protocols. |
| format | Article |
| id | doaj-art-1b28ae2cf65e4cadac16d69f85658156 |
| institution | Kabale University |
| issn | 2500-3259 |
| language | English |
| publishDate | 2015-01-01 |
| publisher | Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders |
| record_format | Article |
| series | Вавиловский журнал генетики и селекции |
| spelling | doaj-art-1b28ae2cf65e4cadac16d69f856581562025-02-01T09:58:00ZengSiberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and BreedersВавиловский журнал генетики и селекции2500-32592015-01-01174/1589598166rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCERD. A. Rasskazov0E. V. Antontseva1L. O. Bryzgalov2M. Yu. Matveeva3E. V. Kashina4P. M. Ponomarenko5G. V. Orlova6M. P. Ponomarenko7D. A. Afonnikov8T. I. Merkulova9Institute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaSix regulatory SNPs (single nucleotide polymorphisms) of two human APC and MLH1 genes (rs75996864, rs76241113, rs78037487, rs80112297, rs80313086 and rs1800734) were evaluated by the previously developed rSNP_Guide method to compute the significance of the changes for binding of the SNP region with 40 transcription factors. For each SNP, all analyzed proteins were ranged according to the significance of the changes for protein binding to the alleles evaluated by Student’s t-test. We found that rs75996864, rs76241113, rs78037487, rs80112297, and rs80313086 of APC, as well as rs1800734 of MLH1 in humans concerned to the greatest extent the binding of transcription factors NF-Y, NFkB, c-Myb, RAR, YY-1, and Sp-1, which are known to be involved in colon cancer development. Our results substantiate investigation of associations of rs75996864, rs76241113, rs78037487, rs80112297, and rs80313086 in the APC gene with colon cancer by using commonly accepted medical and genetic protocols.https://vavilov.elpub.ru/jour/article/view/182single-nucleotide polymorphismgene expression regulationcolon cancerapcmlh1 genesdna–regulatory protein complexstudent’s t-test |
| spellingShingle | D. A. Rasskazov E. V. Antontseva L. O. Bryzgalov M. Yu. Matveeva E. V. Kashina P. M. Ponomarenko G. V. Orlova M. P. Ponomarenko D. A. Afonnikov T. I. Merkulova rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER Вавиловский журнал генетики и селекции single-nucleotide polymorphism gene expression regulation colon cancer apc mlh1 genes dna–regulatory protein complex student’s t-test |
| title | rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER |
| title_full | rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER |
| title_fullStr | rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER |
| title_full_unstemmed | rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER |
| title_short | rSNP_Guide-BASED EVALUATION OF SNPs IN PROMOTеRS OF THE HUMAN APC AND MLH1 GENES ASSOCIATED WITH COLON CANCER |
| title_sort | rsnp guide based evaluation of snps in promotеrs of the human apc and mlh1 genes associated with colon cancer |
| topic | single-nucleotide polymorphism gene expression regulation colon cancer apc mlh1 genes dna–regulatory protein complex student’s t-test |
| url | https://vavilov.elpub.ru/jour/article/view/182 |
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