Enhancing human phenotype ontology term extraction through synthetic case reports and embedding-based retrieval: A novel approach for improved biomedical data annotation

With the increasing utilization of exome and genome sequencing in clinical and research genetics, accurate and automated extraction of human phenotype ontology (HPO) terms from clinical texts has become imperative. Traditional methods for HPO term extraction, such as PhenoTagger, often face limitati...

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Bibliographic Details
Main Authors: Abdulkadir Albayrak, Yao Xiao, Piyush Mukherjee, Sarah S. Barnett, Cherisse A. Marcou, Steven N. Hart
Format: Article
Language:English
Published: Elsevier 2025-01-01
Series:Journal of Pathology Informatics
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Online Access:http://www.sciencedirect.com/science/article/pii/S2153353924000488
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