Dissection of tumoral niches using spatial transcriptomics and deep learning

Summary: This study introduces TG-ME, an innovative computational framework that integrates transformer with graph variational autoencoder (GraphVAE) models for dissection of tumoral niches using spatial transcriptomics data and morphological images. TG-ME effectively identifies and characterizes ni...

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Bibliographic Details
Main Authors: Karla Paniagua, Yu-Fang Jin, Yidong Chen, Shou-Jiang Gao, Yufei Huang, Mario Flores
Format: Article
Language:English
Published: Elsevier 2025-04-01
Series:iScience
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S2589004225004754
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