Optimal transport reveals dynamic gene regulatory networks via gene velocity estimation.

Inferring gene regulatory networks from gene expression data is an important and challenging problem in the biology community. We propose OTVelo, a methodology that takes time-stamped single-cell gene expression data as input and predicts gene regulation across two time points. It is known that the...

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Bibliographic Details
Main Authors: Wenjun Zhao, Erica Larschan, Björn Sandstede, Ritambhara Singh
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2025-05-01
Series:PLoS Computational Biology
Online Access:https://doi.org/10.1371/journal.pcbi.1012476
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