Feasibility of Bamboo Sawdust as Sustainable Alternative Substrate for <i>Auricularia heimuer</i> Cultivation by Ya-Hui Wang, Cong-Sheng Yan, Yong-Jin Deng, Zheng-Fu Zhu, Hua-An Sun, Hui-Ping Li, Hong-Yuan Zhao, Guo-Qing Li

“…Transcriptome analysis identified upregulation of glycosyl hydrolase family genes and downregulation of redox-related genes with increasing bamboo proportions. …”
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Transcriptional profiling of nitrogen fixation and the role of NifA in the diazotrophic endophyte Azoarcus sp. strain BH72. by Abhijit Sarkar, Barbara Reinhold-Hurek

“…In addition to modulation of genes related to N2 fixation, the expressions of gene clusters that might be related to plant-microbe interaction and of several transcription factors were significantly enhanced. While comparing under N2-fixation conditions the transcriptome of wild type with a nifLA(-) insertion mutant, NifA being the essential transcriptional activator for nif genes, 24.5% of the genome was found to be affected in expression. …”
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Drosophila Piwi distinguishes transposons from mRNAs by piRNA complementarity and abundance by Masaru Ariura, Therese Solberg, Hirotsugu Ishizu, Hazuki Takahashi, Piero Carninci, Haruhiko Siomi, Yuka W. Iwasaki

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Distinct effects of two dominant enteric bacteria on the developmental performance of Spodoptera frugiperda and their association with physiological metabolism by Wendou Fu, Peng Wang, Peicong He, Dong Chu

“…Transcriptome sequencing analysis of differential gene expression revealed significant suppression of genes related to physiological metabolism and carbohydrate transport in E. casseliflavus. …”
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IrSPI, a tick serine protease inhibitor involved in tick feeding and Bartonella henselae infection. by Xiang Ye Liu, Jose de la Fuente, Martine Cote, Ruth C Galindo, Sara Moutailler, Muriel Vayssier-Taussat, Sarah I Bonnet

“…This study provides a comprehensive analysis of I. ricinus SG transcriptome and contributes significant genomic information about this important disease vector. …”
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Effect of Spinetoram Stress on Midgut Detoxification Enzyme and Gene Expression of <i>Apis cerana cerana</i> Fabricius by Lin Chen, Tianjun He, Linglong Ding, Xinyan Lan, Jiahao Sun, Xiaoheng Xu, Huafen Wu, Dayun Zhou, Zhichu Huang, Tianxing Zhou, Xiaoling Su, Limin Chen

“…Transcriptome analysis revealed 32 differentially expressed genes (DEGs) that were common to both the LC₂₀ vs. control (CK) and LC₅₀ vs. …”
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Expression of senescence-related CD161 promotes extranodal NK/T cell lymphoma by affecting T cell phenotype and cell cycle by Chengxun Jin, Xin Li, Chaohe Zhang

“…Compared with the control group, the expressions of CD4 and CD161 in the aging group were significantly increased, while the expression of CD8 was decreased. Transcriptome analysis revealed 2,843 differentially expressed genes (DEGs) between the control and aging groups, with 2,060 up-regulated and 783 down-regulated genes identified. …”
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Multi-level regulation of hindgut homeostasis by volatile fatty acid administration in dairy goats: linking microbial metabolism to epithelial inflammation and barrier function by Yongkang Zhen, Ali Rahmat, Chong Zhang, Jiaqi Lin, Jianjun Ma, Yuhong Zhong, Mengzhi Wang

“…Cecal contents were collected for 16S rRNA sequencing and metabolome analysis, and colonic epithelial cells were harvested for transcriptome sequencing. …”
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Time-sensitive effects of quercetin on rat basophilic leukemia (RBL-2H3) cell responsiveness and intracellular signaling. by Mana Matsuo, Shuang Liu, Haruna Yamada, Erika Takemasa, Yasuyuki Suzuki, Masaki Mogi

“…We employed comprehensive transcriptome analysis and subsequent functional validation of key signaling pathways. …”
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Transposable elements may enhance antiviral resistance in HIV-1 elite controllers by Manvendra Singh, Sabrina M. Leddy, Luis Pedro Iñiguez, Matthew L. Bendall, Douglas F. Nixon, Cédric Feschotte

“…To begin testing this hypothesis, we conduct a TE-centric analysis of public multi-omics data from ECs and other populations. …”
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Therapeutic and continuative effects of human umbilical cord–derived mesenchymal stromal cells in food-allergic mice by Yuan Zhao, Yabing Ding, Zhaoyan Wang, Qian Wang, Dou Ye, Zuo Luan

“…The phenotypes of hUC-MSCs were analysed using flow cytometric analysis. Immunohistochemistry was used for histology observation. …”
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Hippocampal gray matter volume alterations in patients with first-episode and recurrent major depressive disorder and their associations with gene profiles by Fenfen Sun, Yifan Shuai, Jingru Wang, Jin Yan, Bin Lin, Xinyun Li, Zhiyong Zhao

“…Results Compared to NC, FEDN patients displayed reduced GMV in the left hippocampal tail, whereas R-MDD patients exhibited decreased GMV in the bilateral hippocampal body and increased GMV in the bilateral hippocampal tail. Further analysis revealed that expression levels of SYTL2 positively correlated with GMV changes in the hippocampus of FEDN patients, while SORCS3 and SLIT2 positively correlated with those in R-MDD. …”
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Research on the construction of corneal endothelium transplantation with acellular amniotic membrane as a scaffold by Ya-Nan Chen, Rui-Qin Guo, Bo-Yu Liang, Hong-Qin Ke, Meng-Jie Dong, Ming-Fang He, Ji Yang, Hai Liu

“…The HAAM promoted cell viability and proliferation, as evidenced by positive expression of tight junction proteins and upregulation of key functional genes. Transcriptome analysis identified genes involved in proliferation and matrix synthesis, further supporting the biocompatibility and functional properties of the HAAM.DiscussionThe HAAM scaffold demonstrated excellent transparency, mechanical properties, and biocompatibility, making it suitable for the attachment and proliferation of HCECs. …”
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The Role of <i>Aspergillus niger</i> in Regulating Internal Browning Involves Flavonoid Biosynthesis and the Endophytic Fungal Community of Pineapple by Fei Shen, Guang Wang, Shijiang Zhu

“…Transcriptome and metabolome analyses of pineapple showed that An upregulated genes of flavonoid synthesis, including <i>dihydroflavonol 4-reductase</i> and <i>flavonoid 3′-monooxygenase</i> and increased the flavonoid content in pineapple fruit, i.e., Hispidulin, Hispidulin-7-O-Glucoside, and Diosmetin, while AnM could not. …”
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Microglia in the aged brain develop a hypoactive molecular phenotype after surgery by Zhuoran Yin, Anna K. Leonard, Carl M. Porto, Zhongcong Xie, Sebastian Silveira, Deborah J. Culley, Oleg Butovsky, Gregory Crosby

“…Both qPCR and RNAseq analysis demonstrated suppression of neuroinflammation at 6 h after surgery in microglia isolated from aged mice. …”
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Identification of novel proteins associated with intelligence by integrating genome-wide association data and human brain proteomics. by Zheng Zhang, Yousong Zhu, Junlong Zhang, Wenbin He, Cheng Han

“…While genome-wide association studies (GWAS) have identified genetic variants associated with intelligence, their biological mechanisms remain largely unexplored. …”
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A Zeolitic Imidazolate Framework-Based Antimicrobial Peptide Delivery System with Enhanced Anticancer Activity and Low Systemic Toxicity by Jingwen Jiang, Kaderya Kaysar, Yanzhu Pan, Lijie Xia, Jinyao Li

“…We characterized this system in terms of morphology, particle size, zeta potential, infrared (IR), x-ray diffraction (XRD), and transcriptome analysis, and examined the in vitro cytotoxicity and cellular uptake properties of CEC@ZIF-8 using cervical cancer cells. …”
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A reliable prognostic model for hepatocellular carcinoma using neutrophil extracellular traps and immune related genes by Defeng Yuan, Feng Zhang, Pengfei Lv, Jun Zhu, Haiwei Zhang, Zhengcong Zhang

“…Drug sensitivity analysis identified 74 drugs with differential sensitivity between risk groups; axitinib showed lower sensitivity in high-risk patients, while ABT-888 showed higher sensitivity. …”
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Integrated TWAS, GWAS, and RNAseq results identify candidate genes associated with reproductive traits in cows by Sevda Hosseinzadeh, Seyed Abbas Rafat, Lingzhao Fang

“…Since reproductive traits are complex and have low heritability, genetic analysis can aid in improving reproduction. This study identified key genes linked to fertility by conducting genome- and transcriptome-wide association studies, RNA-seq analysis, meta-analysis, weighted gene co-expression network analysis, and functional enrichment analysis. …”
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AtMYB72 aggravates photosynthetic inhibition and oxidative damage in Arabidopsis thaliana leaves caused by salt stress by Hongrui Zhang, Yinuo Wu, Hongbo Zhang, Nan Sun, Hongjiao Zhang, Bei Tian, Tanhang Zhang, Kexin Wang, Xu Nan, Huiui Zhang

“…Phenotypic observation showed that the damage of overexpression strain was more serious than that of Col-0 after salt treatment, while the mutant strain showed less salt injury symptoms. …”
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