Transcriptome analysis reveals defense responses of alfalfa seedling roots to Sclerotium rolfsii by Shizhen Jia, Shizhen Jia, Zhencuo Dan, Zhencuo Dan, He Li, He Li, Yuhan Guo, Yuhan Guo, Lei Jia, Lei Jia, Ailing Yu, Ailing Yu, Huitong Zhan, Huitong Zhan, Xiangjun Liu, Xiangjun Liu, Teng Gao, Teng Gao, Yun Shi, Yun Shi, Zeng-Yu Wang, Zeng-Yu Wang, Lili Cong, Lili Cong, Lili Cong

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Meta-Transcriptomic Response to Copper Corrosion in Drinking Water Biofilms by Jingrang Lu, Ian Struewing, Nicholas J. Ashbolt

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Transcriptome-wide identification and systematic analysis of the Retrotransposon genes and their roles in ginsenoside biosynthesis in Panax ginseng by Chaofan Wang, Ruicen Liu, Dinghui Wang, Li Li, Yue Jiang, Yanfang Wang, Kangyu Wang, Mingzhu Zhao, Yi Wang, Meiping Zhang

“…Methyl Jasmonate (MeJA)-induced transcriptome analysis identified 15 of 30 genes significantly responsive to MeJA regulation, five of which were strongly linked to ginsenosides contents variation. …”
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Exploring the Shared Genetic Characteristics of Peri-Implantitis and Osteoporosis: A Transcriptomic Analysis Perspective by Churen Zhang, Feixiang Wang, Jianguo Ke, Cuihong Lin, Xiaohua Zeng, Qiuyan Yang, Qiaoling Cai

“…Functional enrichment analysis revealed that intersected DEGs are involved in regulating oxidative stress, lipid metabolism, and osteoclast differentiation, while immune cell infiltration analyses highlighted correlations between gene expression and various immune cell types. …”
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Transcriptome sequencing of Antheraea pernyi antennae for identification of olfactory-related genes by Xueting Liu, Shuwei Ma, Xinxue Zhang, Xue Li, Lei Nie, Guobao Wang

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Comparative metabolome and transcriptome analysis of foxtail millet cultivars with high and low grain quality by Yiru Zhang, Xinjie Yao, Pengyu Tian, Canran Zhang, Xiaodong Liu, Hongying Li, Yuanhuai Han

“…These findings provide mechanistic insights into metabolic determinants of millet quality while establishing a framework for targeted breeding strategies to enhance both nutritional value and sensory characteristics in foxtail millet.…”
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Transcriptome and detoxification enzyme–related gene analysis of the Cydia pomonella response to walnut husks by Xiaoyan Cao, Guangdong Li, Xiaoqin Ye, Adil Sattar

“…This study preliminarily elucidated the detoxification mechanism of C. pomonella in response to walnut husks using transcriptome (total RNA sequencing) analysis and enzyme activity assays. …”
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Spatial transcriptome analysis of myenteric plexus and intestinal epithelium of colon in patients with Parkinson’s disease by Chaewon Shin, Karoliina Eliisa Ruhno, Jung Hwan Shin, Sanha Hwang, Jasper Roldan Go, Minji Kang, Hyun Je Kim, Ji Hwan Moon, Han-Joon Kim

“…A spatial transcriptomic analysis of the brain and the gastrointestinal tract will enable a better understanding of the gut-brain axis in PD.…”
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In the battle of survival: transcriptome analysis of hypopharyngeal gland of the Apis mellifera under temperature-stress by Abdulkadir Yusif Maigoro, Jeong Hyeon Lee, Yumi Yun, Sujin Lee, Hyung Wook Kwon

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Combined metabolomic and transcriptomic analysis reveals the key genes for triterpenoid biosynthesis in Cyclocarya paliurus by Duo Chen, Xupeng Chen, Xuehai Zheng, Jinmao Zhu, Ting Xue

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An Integrative Analysis of the Transcriptome and Proteome of Rice Grain Chalkiness Formation Under High Temperature by Shaolu Zhao, Ruijie Cao, Linhe Sun, Dongying Zhuang, Min Zhong, Fengli Zhao, Guiai Jiao, Pengfei Chen, Xinwei Li, Yingqing Duan, Xiaoxue Li, Shaoqing Tang, Shen Ni, Peisong Hu, Xiangjin Wei

“…Grains under HT stress exhibited an opaque, milky-white appearance, alongside significant alterations in starch physicochemical properties. An integrated transcriptomic analysis of grains under HT revealed up-regulation of genes related to defense mechanisms and oxidoreductase activity, while genes involved in sucrose and starch synthesis were down-regulated, and α-amylase genes were up-regulated. …”
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Identification of molecular characteristics in polycystic ovary syndrome using single-cell and transcriptome analysis by Xiaolin Zhu, Yanhua Han, Yuenan Feng, Yuanli Shan, Chang Liu, Kexin Wang, Xiaoke Li, Shidi Zhang, Yaguang Han

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Exploring Migraine Pathogenesis: Transcriptomic Insights and Pathway Analysis in Nitroglycerin-Induced Rat Model by Qiao-Wen Chen, Run-Tian Meng, Chih-Yuan Ko

“…Rats with NTG-induced migraine showed increased head scratching and cage climbing and a reduced sucrose preference. Transcriptome analysis revealed 1564 differentially expressed genes, with 1233 upregulated and 331 downregulated. …”
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Liver transcriptome analysis reveals PSC-attributed gene set associated with fibrosis progression by Alena Laschtowitz, Eric L. Lindberg, Anna-Maria Liebhoff, Laura Anne Liebig, Christian Casar, Silja Steinmann, Adrien Guillot, Jun Xu, Dorothee Schwinge, Michael Trauner, Ansgar Wilhelm Lohse, Stefan Bonn, Norbert Hübner, Christoph Schramm

“…Results: Differential gene expression analysis of the liver transcriptome from patients with PSC with advanced vs. early fibrosis revealed 431 genes associated with fibrosis development. …”
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Metabolomic and Transcriptomic Analysis of the Mechanism of the Apple Coloration Change After Uncovering Fruit Bag by Pengwei Duan, Xiaojian Ma, Haiqiang Shi, Lizhe Qin, Jizhuang Du, Sumiao Yang, Jianjun Zhang

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Transcriptomic analysis reveals the mechanism underlying salinity-induced morphological changes in Skeletonema subsalsum by Jingwen Hu, Ya Zheng, Shuang Yang, Lin Yang, Lin Yang, Qingmin You, Quanxi Wang

“…To further investigate the mechanism underlying morphological changes in S. subsalsum, complementary transcriptome analysis was performed. In total, 20,138 differentially expressed genes (DEGs) were identified among the four treatments. …”
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Physiological insights into the responses of tea plants to aluminum through an integrated transcriptomic and metabolomic analysis by Xinwan Zhang, Shijie Luo, Xiali Ye, Lin Liu, Xinxin Jia, Deyuan Jiang, Weiwei Wen

“…This study explored the responses of tea plants to varying Al concentrations at both metabolomic and transcriptomic levels. Compared to 0 mM Al treatment, low Al concentrations (0.4 mM) enhanced root vitality by 8.91%, while higher Al concentrations (10 and 100 mM) reduced root vigor by 19.31% and 76.81%, respectively. …”
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Transcriptome Analysis of Apple Leaves with Apple Necrotic Mosaic Virus-Associated Mosaic Symptoms by Dehang Gao, Fei Xing, Qin Yan, Zhixiang Zhang, Binhui Zhan, Meiguang Lu, Yunlong Ma, Hongqing Wang, Shifang Li, Jipeng Xie

“…In this study, we performed transcriptome analysis to investigate apple gene responses to AMD. …”
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Cross-tissue transcriptome-wide analysis reveals novel insights into thyroid cancer etiology by Yue Zhu, Yu Luo, Yuye Zhang, Yixuan Wang, Zhangqi Gu, Jinyan Liu, Ancheng Qin, Weifeng Qian

“…To explore causal relationships, we conducted Mendelian randomization analysis, while colocalization analysis was used to provide potential shared SNPs between key genes and TC risk. …”
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Modified Methylation Following Electrostimulation in a Standardized Setting—Complementing a Transcriptomic Analysis by Biagio Di Pietro, Simona Villata, Anna Plaksienko, Tiziana Guarnieri, Simeone Dal Monego, Margherita Degasperi, Pietro Di Lena, Danilo Licastro, Claudia Angelini, Francesca Frascella, Lucia Napione, Christine Nardini

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