Effects of hydroxypropyl starch on intestinal health and transcriptome of geese by Pengfei Ye, Wenquan Liu, Xiaotong Tang, Mengxue Liu, Jingfan Han, Xiaoxue Wang, Jie Zhu, Xiaorong He, Xueqi Zhu, Mixia Cao, Lei Zhao, Qingchang Ren

“…The accuracy and reliability of transcriptome sequencing data were confirmed by RT-qPCR. …”
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Unveiling Key Biomarkers and Mechanisms in Septic Cardiomyopathy: A Comprehensive Transcriptome Analysis by Zhao D, Zhuang J, Wang L, Wu L, Xu W, Zhao L, Hong J, Jin W, Miao C

“…Functional enrichment analysis was performed to uncover relevant signaling pathways, while single-cell RNA sequencing was used to examine key genes and regulatory mechanisms associated with SCM.Results: A total of 374 differentially expressed genes (DEGs) were identified, with 268 genes up-regulated and 106 genes down-regulated. …”
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Comparative analysis of translatomics and transcriptomics in the longissimus dorsi muscle of Luchuan and Duroc pigs. by Songtao Su, Hailong Hu, Kang Liu, Siqi Liu, Zupeng Luo, Jingsu Yu, Tianyu Jiang, Xiangling Li, Chang Sun, Lin Yu, Yuehui Liang, Lei Zhou

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Comparative meta-analysis of barely transcriptome: Pathogen type determines host preference. by Zahra Soltani, Ali Moghadam, Mohammadreza Shamekh

“…Therefore, we performed meta-analysis and co-expression gene network analyses of the barley transcriptome in response to fungus and aphid based on hormone signaling pathways. …”
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Integrated analysis of chromatin and transcriptomic profiling of the striatum after cerebral hypoperfusion in mice by Shijia Le, Fengyiyang Xu, Zhi Luo, Weihao Shi, Shuangshuang Lu, Zengyu Zhang, Zimin Guo, Wenshi Xu, Mingqi Yang, Tianyi Li, Xu Li, Kun Liang, Lei Zhu

“…Integrated analysis highlighted PU.1 as a key transcription factor in upregulated pathways, while neural pathways lacked epigenetic regulation, revealing distinct molecular responses in the striatum following chronic hypoperfusion. …”
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Deep Learning-Enabled Integration of Histology and Transcriptomics for Tissue Spatial Profile Analysis by Yongxin Ge, Jiake Leng, Ziyang Tang, Kanran Wang, Kaicheng U, Sophia Meixuan Zhang, Sen Han, Yiyan Zhang, Jinxi Xiang, Sen Yang, Xiang Liu, Yi Song, Xiyue Wang, Yuchen Li, Junhan Zhao

“…Spatially resolved transcriptomics enable comprehensive measurement of gene expression at subcellular resolution while preserving the spatial context of the tissue microenvironment. …”
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Changes in texture and lignin during different developmental stages of mulberries and transcriptome analysis by WANG Binbin, DAI Xianglong, DU Kaiqun, SHEN Zixin, WANG Hui, GAO Yanxia

“…The texture indicators (hardness, adhesiveness, cohesiveness, elasticity, gumminess, and chewiness) were measured using a texture analyzer, lignin content was determined using the concentrated sulfuric acid method, and transcriptome sequencing was performed. The QRT-PCR experiments were conducted, and redundancy analysis (RDA) was used to analyze the correlation between lignin, berry texture, and lignin biosynthesis-related genes, as well as to evaluate the relationships among various factors. …”
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Single-cell analysis reveals significant transcriptomic alterations in preclinical Crohn’s disease by Dimitrios Kioroglou, Leire Egia-Mendikute, Asis Palazon, Asis Palazon, Manuel Barreiro-de Acosta, Iago Rodríguez-Lago, Iago Rodríguez-Lago, Urko M. Marigorta, Urko M. Marigorta

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Transcriptomic and physiological biochemical analysis reveals the impact of polystyrene nanoplastics on the quality of nuts by Weijie Chen, Xiao Liu, Xuanzi Zhang, Ying Zhang, Xinyi Ma, Jiasheng Wu

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Transcriptome Analysis Reveals Significant Differences in Gene Expression of Malignant Pheochromocytoma or Paraganglioma by Yong Joon Suh, Jung Ho Park, Sanchir-Erdene Bilegsaikhan, Dong Jin Lee

“…TCGA carries data pertaining to multigenomic analysis of 173 PC/PG surgical resection samples while the COMETE cohort contains data involving 188 PC/PG surgical resection samples. …”
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Transcriptome Analysis Provides Insights into the Safe Overwintering of Local Peach Flower Buds by Ruxuan Niu, Yongjuan Cheng, Falin Wang, Yiwen Zhang, Chenbing Wang

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Transcriptomic Analysis of <i>Trachinotus ovatus</i> Under Flow Velocity Stress by Jing Zhang, Xixi Liu, Jiayue Dai, Sufang Niu, Xuefeng Wang, Baogui Tang

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Hippocampal Transcriptome Analysis in a Mouse Model of Chronic Unpredictable Stress Insomnia by Shuo Zhang, Changqing Tong, Na Cao, Dong Tian, Linshan Du, Ya Xu, Weiguang Wang, Zijie Chen, Shuangqing Zhai

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Transcriptomic analysis reveals the function of m6A regulators in aged cochlea by Yanbing Lai, Bo Su, Xiaodi Wang, Chenghui Zeng, Hanqi Chu, Liangqiang Zhou, Dan Bing

“…Methods: We sequenced the transcriptome from the cochleae of six young (2-mo) and six old mice (24-mo) bioinformatics analysis. …”
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BcatrB mediates pyrimethanil resistance in Botrytis cinerea revealed by transcriptomics analysis by Shuqi Wang, Xinyi Zhang, Shan Zhong, Rong Wang, Bingwei Chen, Wanlong Ding, Hongmei Luo, Yong Li

“…The results indicate that BcatrB plays a central role in pyrimethanil resistance, while methionine contributes only marginally to resistance mechanisms.…”
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Transcriptome analysis to decipher the molecular underpinnings of response to treatment in systemic lupus erythematosus by Dimitrios T Boumpas, Antonis Fanouriakis, George Bertsias, Dionysis Nikolopoulos, Aggelos Banos, Anastasia Filia, Antigone Pieta, Sofia Flouda, Katerina Chavatza, Panagiotis Garantziotis, Spyridon Katechis, Noemin Kapsala, George Sentis, Georgia Savina Moysidou, Nikos Malissovas

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Genomic and Transcriptomic Analysis to Explore the Biological Characteristics of <i>Cyclocybe chaxingu</i> by Qiang Yang, Haiyan Song, Ge Su, Xuncheng Wang, Haijing Hu, Zhijun Zhai, Minghui Chen, Jianping Zhou, Hua Yin, Yang Gao, Dianming Hu

“…Transcriptomic analysis revealed distinct gene expression patterns in mycelia, stipe, and cap, reflecting their functional specialization. …”
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Immune inflammatory regulation in Anti-NMDAR encephalitis: insights from transcriptome analysis by Shan Qiao, Shan Qiao, Jia Wang, Shan-chao Zhang, Ai-hua Wang, Hai-yun Li, Tao Xin, Tao Xin

“…The Illumina HiSeq platform was used to do transcriptome sequencing. We utilized R software to identify differentially expressed genes (DEGs) and performed a functional enrichment analysis. …”
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Comparative Analysis of Ratoon-Competent and Ratoon-Deficient Sugarcane by Hormonal and Transcriptome Profiling by Liping Zhao, Maoyong Ran, Jing Zhang, Peifang Zhao, Fenggang Zan, Jun Zhao, Wei Qin, Qibin Wu, Jiayong Liu, Xinlong Liu

“…Through integrated hormonal profiling and transcriptome analysis, we identified significant differences in hormone levels and gene expression patterns. …”
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Transcriptomic analysis of the toxic effects and potential mechanisms of fenvalerate on the liver of Odontobutis potamophila by Guoxing Liu, Tian Zhu, Zihan Zhou, You Zheng, Yanhua Zhao, Chen Hao, Shuyan Ding, Xiuhui Tan, Qichen Jiang

“…The results showed that FEN exposure caused tissue damage and oxidative stress in O. potamophila liver in a concentration-dependent manner. Transcriptomic analysis revealed 2083 differentially expressed genes (DEGs) between control (CK) and C0.5 treatments and 2595 DEGs between CK and C2 treatments. …”
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