Transcriptomic analysis of CDL-gated photoperiodic flowering mechanisms in cannabis and their responsiveness to R: FR ratios in controlled environment agriculture by Samuel R. Haiden, Nathan Johnson, Gerald A. Berkowitz

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Global Transcriptome Analysis Reveals Distinct Aluminum-Tolerance Pathways in the Al-Accumulating Species Hydrangea macrophylla and Marker Identification. by Haixia Chen, Changping Lu, Hui Jiang, Jinhui Peng

“…In this study, we conducted a genome-wide transcriptome analysis of Al-response genes in the roots and leaves of hydrangea by RNA sequencing (RNA-seq). …”
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Integrated metabolomic and transcriptomic analysis highlight the flavonoid response to antioxidant activity and Aspergillus flavus resistance in peanut seed coats by Xuejie Zhao, Minghui Xing, LiJing Zhang, Suoyi Han, Xinyou Zhang, Jinyong Huang

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Comparative genome and transcriptome analysis of the endophytic fungus Epichloë sibirica reveals biological control mechanism in host Achnatherum sibiricum by Xinjian Shi, Tianzi Qin, Yubao Gao, Nianxi Zhao, Anzhi Ren

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Identification of a deubiquitinating gene-related signature in ovarian cancer using integrated transcriptomic analysis and machine learning framework by Suwan Hu, Mengting Wang

“…Methods We conducted an integrated analysis of single-cell RNA sequencing and bulk transcriptome data from public databases. …”
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Time-course transcriptome analysis reveals gene co-expression networks and transposable element responses to cold stress in cotton by Yan Dai, Jialiang Zhou, Baohong Zhang, Dewei Zheng, Kai Wang, Jinlei Han

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Biomarkers and potential therapeutic targets driving progression of non-alcoholic steatohepatitis to hepatocellular carcinoma predicted through transcriptomic analysis by Hui Fan, Rong Wang, Bin Wen, Jing Xiong

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Transcriptome Analysis Reveals the Molecular Mechanism of <i>Pseudomonas</i> with Different Adhesion Abilities on <i>Tilapia</i> Decay by Liumin Zhuang, Chen Song, Yunru Wei, Jinzhi Han, Li Ni, Chengxu Ruan, Wen Zhang

“…LP-3, with reduced adhesion ability after NaCl regulation, showed a diminished capacity to cause fish spoilage. Transcriptomics analysis was used to examine two <i>Pseudomonas</i> strains that exhibited different adhesion abilities, leading to the identification of an adhesion regulatory network involving flagellar assembly regulation, bacterial chemotaxis, quorum sensing, two-component systems, biofilm formation, and bacterial secretion systems. …”
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Transcriptome Analysis Reveals Immune and Antioxidant Defense Mechanisms in the <i>Eriocheir japonica sinensis</i> after Exposure to Ammonia by Xi-Rong Zhu, Ye Jin, Xue Zhang, Qiu-Ning Liu, Bo-Ping Tang

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Comparative transcriptome analysis of emerging young and mature leaves of Bienertia sinuspersici, a single-cell C4 plant by Richard M. Sharpe, Seanna Hewitt, Gerald Edwards, Amit Dhingra

“…Methods To gain insight into the genes and pathways associated with the C3 to C4 transition between emerging young and mature Bienertia sinuspersici leaves, a comparative transcriptome analysis was conducted in which global gene expression and gene ontologies were compared between the two stages. …”
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Multi-omics integrated analysis to generate transcriptome and protome profiles of resveratrol improving Paraquat-induced acute lung injury by Ziying Xu, Lijuan Huang, Zihui Yu, Yagang Gao, Ruikun Wang, Bing Du, Xiaohu Cui, Jing Yuan

“…In the in vitro experiment using A549 cells, Resveratrol effectively alleviated Paraquat-induced oxidative stress and iron ion deposition, significantly increasing cell viability (P < 0.05). Through transcriptomic and proteomic analysis, Resveratrol was found to upregulate genes and proteins associated with inflammation, cell death, and lipid peroxidation, while downregulating those related to lipid peroxidation and iron. …”
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Transcriptome analysis of CsWOX1 mutant and overexpressing lines reveals downstream genes regulating cucumber leaf morphogenesis by Anran Zhang, Xiangbao Li, Helong Zhang, Yanxin Jiang, Qingqing Li, Junjun Shen, Zheng Li

“…Specifically, CsWOX1-OE cucumber plants exhibit leaves with a distinctive 'butterfly-shaped' appearance, while mf mutants show a rapid reduction in the area of their leaf tips. …”
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Transcriptome analysis of mammary epithelial cell between Sewa sheep and East FriEsian sheep from different localities by Rui Li, Junru Pan, Cheng Pan, Jingjing Li, Zhenzhen Zhang, Khuram Shahzad, Yu Sun, Quzhu Yixi, Wangjie Zhaxi, Haofeng Qing, Tianzeng Song, Wangsheng Zhao

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Phenotypic and Transcriptomic Analysis Revealed a Lack of Risk Perception by Native Tadpoles Toward Novel Non‐Native Fish by Yuanfei Wang, Yudong Zhu, Liuyang He, Haoqi Yu, Xiuqin Lin, Jianghong Ran, Feng Xie

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Comparative transcriptome analysis reveals key genes associated with meiotic stability and high seed setting rate in tetraploid rice by Pincang Lv, Man Wang, Rongjie Qiu, Chang Yao, Meng Fang, Yuandong Xing, Xianhua Zhang, Yuchi He, Detian Cai, Zhaojian Song

“…Further, comparative transcriptome analysis was performed to identify genes associated with meiotic stability and high seed setting rate in PMeS line. …”
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Transcriptome analysis of gills reveal the key metabolism-related genes and pathways response to ammonia nitrogen stress in Scylla paramamosain by Chaoyue Wang, Xiao Liu, Jie Zhou, Sixiang Wang, Xia Zheng, Zehao Li, Yuanyuan Fu, Zhongwen Jin, Lei Liu

“…These results indicate that ammonia nitrogen stress enhances ammonia nitrogen metabolism in the anterior gill, while inhibiting this process in the posterior gill. …”
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Transcriptome analysis of nitrogen assimilation preferences in Burkholderia sp. M6-3 and Arthrobacter sp. M7-15 by Ran Liu, Ran Liu, Hongyi Qin, Qian Wang, Cheng Chu, Yunbin Jiang, Huan Deng, Cheng Han, Cheng Han, Wenhui Zhong, Wenhui Zhong, Wenhui Zhong

“…Furthermore, RNA sequencing-based transcriptome analysis was used to map the metabolic pathways of the two strains and explore their explanatory potential for N preferences.ResultsThe results showed that strain M6-3 preferred to utilize NH4+ while strain M7-15 preferred to utilize NO3−. …”
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Mendelian Randomization Combined with Single-Cell Transcriptome Analysis Reveals the Role of the Key Gene PCLAF in the Pathogenesis of Atopic Dermatitis by Tao R, Chen X, Wang Y, Li S, Zhou S, Aghayants S, Yan L, Zhang Q, Zhu Z

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Metabolome and transcriptome analysis reveal the pigments biosynthesis pathways in different color fruit peels of Clausena lansium L. Skeels by Zhichang Zhao, Mark Owusu Adjei, Ruixiong Luo, Huaping Yu, Yali Pang, Jian Wang, Yu Zhang, Jun Ma, Aiping Gao

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Correlates of clinical benefit from immunotherapy and targeted therapy in metastatic renal cell carcinoma: comprehensive genomic and transcriptomic analysis by Sumanta Pal, Paulo Gustavo Bergerot, Nazli Dizman, JoAnn Hsu, Yung Lyou, Nicholas Salgia, Daniel Enriquez, Tyler Izatt, Jeffrey M Trent, Sara Byron

“…TERT promoter mutations were associated with NCB in the IO cohort (p=0.038); transcriptomic analysis revealed multiple differentially regulated pathways downstream of TERT. …”
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