Integrated transcriptomic and metabolomic analyses reveal heterosis for meat quality of Neijiang pigs by Haifeng Dan, Haifeng Dan, Haifeng Dan, Chengming Liu, Chengming Liu, Chengming Liu, Huiling Zhang, Huiling Zhang, Huiling Zhang, Mailin Gan, Mailin Gan, Mailin Gan, Yan Wang, Yan Wang, Yan Wang, Lei Chen, Lei Chen, Lei Chen, Ye Zhao, Ye Zhao, Ye Zhao, Bin Liu, Kangping Zhu, Lili Niu, Lili Niu, Lili Niu, Li Zhu, Li Zhu, Li Zhu, Linyuan Shen, Linyuan Shen, Linyuan Shen

“…Obese pig breeds have excellent meat quality, while lean pig breeds have high lean meat percentage and feed conversion rate. …”
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Exploring the Metabolic and Transcriptomic Profiles of Tetrastigma hemsleyanum for Tissue-Specific Compound Accumulation by Lingxia Peng, Hongju Li, Lijun Yang, Zongsuo Liang, Zongsuo Liang, Xiaodan Zhang

“…Flavonoids, glycosides, alkaloids, and terpenoids were strongly accumulated in the tuberous roots, while flavonoid alcohols, glycosides, alkaloids, and terpenoids were predominant in the leaves and fibrous roots. …”
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Multi-tissue transcriptomic characterization of endogenous retrovirus-derived transcripts in Capra hircus by Ming-Di Li, Ming-Di Li, Hu-Rong Li, Shao-Hui Ye

“…TE-derived reads account for 10% of the transcriptome and their abundance are comparable in various goat tissues, while expression of ERVs are variable among tissues. …”
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Transcriptome Analysis Provides Insights into the Safe Overwintering of Local Peach Flower Buds by Ruxuan Niu, Yongjuan Cheng, Falin Wang, Yiwen Zhang, Chenbing Wang

“…A total of 10,168 differential genes were annotated through transcriptome sequencing. Among them, 4975 were up-regulated while 5193 were down-regulated. …”
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Transcriptomic Analysis of <i>Trachinotus ovatus</i> Under Flow Velocity Stress by Jing Zhang, Xixi Liu, Jiayue Dai, Sufang Niu, Xuefeng Wang, Baogui Tang

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White matter dysfunction in Alzheimer’s disease is associated with disease-related transcriptomic signatures by Yilu Li, Guanyu Zhou, Jinzhong Peng, Lin Liu, Fanyu Zhang, Yasser Iturria-Medina, Dezhong Yao, Bharat B. Biswal, Pan Wang

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Integration of metabolomics and transcriptomics analyses reveals the effects of nano-selenium on pak choi by Yanyan Wang, Peiheng Sun, Mingying Nie, Jianyun Zhan, Liu Huang, Junda Wu, Jie Zhang, Xiaowu He, Na Li, Longsong Hu, Shiyu Liu, Chengfu Yuan, Changming Zhou, Guangjie Chen, Jialong Huang, Xiaofei Li

“…The findings revealed that a low concentration (5 mg L−1) of nano-selenium significantly increased leaf weight and total selenium content, while modulating primary metabolites such as soluble amino acids, proteins, sugars and ascorbic acid. …”
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Transcriptomic and metabolomic analyses reveal phenolic metabolism regulated by melatonin in pear peel by Shuai Yan, Liangliang Zhao, Deying Zhao, Gongxun Xu, Yufei Wang, Zhiqin Zhou, Cungang Cheng

“…It can influence the key enzyme genes’ expression of phenolic metabolism while stimulating the production of l-phenylalanine, cinnamic acid, caffeic acid, ferulic acid, leucocyanidin and uridine 5ʹ-diphospho-d-glucose, which promote the biosynthesis of anthocyanidins, phenolic acids, and lignins. …”
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Novel kinetic and developmental transcriptomic pan-stress responses by embryonic stem cells by Aditi Singh, Ximena Lu Ruden, Wen Tang, Awoniyi Olumide Awonuga, Douglas Mark Ruden, Steven James Korzeniewski, Elizabeth Ella Puscheck, Hao Feng, Daniel Allen Rappolee

“…Notably, ninety-four genes display significant expression changes under four weaker stressors and normal differentiation conditions, while a twenty-one/ninety-four gene subset exhibits shared significance with the inclusion of two stronger stimuli. …”
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Mechanisms of Microctis Folium in Hyperlipidemia: Integrating Serum Pharmacochemistry, Network Pharmacology, and Transcriptomics by Xiao G, Wu G, Liu Y, Chen W, Zeng Z, Li S, Li Y, Bi X

“…Merr, hyperlipidemia, network pharmacology, serum pharmacochemistry, transcriptomics…”
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Hippocampal Transcriptome Analysis in a Mouse Model of Chronic Unpredictable Stress Insomnia by Shuo Zhang, Changqing Tong, Na Cao, Dong Tian, Linshan Du, Ya Xu, Weiguang Wang, Zijie Chen, Shuangqing Zhai

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Transcriptomic analysis reveals the function of m6A regulators in aged cochlea by Yanbing Lai, Bo Su, Xiaodi Wang, Chenghui Zeng, Hanqi Chu, Liangqiang Zhou, Dan Bing

“…Methods: We sequenced the transcriptome from the cochleae of six young (2-mo) and six old mice (24-mo) bioinformatics analysis. …”
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BcatrB mediates pyrimethanil resistance in Botrytis cinerea revealed by transcriptomics analysis by Shuqi Wang, Xinyi Zhang, Shan Zhong, Rong Wang, Bingwei Chen, Wanlong Ding, Hongmei Luo, Yong Li

“…The results indicate that BcatrB plays a central role in pyrimethanil resistance, while methionine contributes only marginally to resistance mechanisms.…”
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Comparison of Transcriptomic Signatures between Monkeypox-Infected Monkey and Human Cell Lines by Do Thi Minh Xuan, I-Jeng Yeh, Chung-Che Wu, Che-Yu Su, Hsin-Liang Liu, Chung-Chieh Chiao, Su-Chi Ku, Jia-Zhen Jiang, Zhengda Sun, Hoang Dang Khoa Ta, Gangga Anuraga, Chih-Yang Wang, Meng-Chi Yen

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Transcriptome analysis to decipher the molecular underpinnings of response to treatment in systemic lupus erythematosus by Dimitrios T Boumpas, Antonis Fanouriakis, George Bertsias, Dionysis Nikolopoulos, Aggelos Banos, Anastasia Filia, Antigone Pieta, Sofia Flouda, Katerina Chavatza, Panagiotis Garantziotis, Spyridon Katechis, Noemin Kapsala, George Sentis, Georgia Savina Moysidou, Nikos Malissovas

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Genomic and Transcriptomic Analysis to Explore the Biological Characteristics of <i>Cyclocybe chaxingu</i> by Qiang Yang, Haiyan Song, Ge Su, Xuncheng Wang, Haijing Hu, Zhijun Zhai, Minghui Chen, Jianping Zhou, Hua Yin, Yang Gao, Dianming Hu

“…GO and KEGG enrichment analyses demonstrated the stipe’s association with structural integrity and transport, while the cap is linked to metabolic activity, gene regulation, stress responses, and DNA repair. …”
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Immune inflammatory regulation in Anti-NMDAR encephalitis: insights from transcriptome analysis by Shan Qiao, Shan Qiao, Jia Wang, Shan-chao Zhang, Ai-hua Wang, Hai-yun Li, Tao Xin, Tao Xin

“…INSL3 and TPT1 may serve as potential auxiliary diagnostic biomarkers, while monocyte, CD8+ T cell, and Treg infiltration likely synergistically drive disease progression.…”
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Comparative transcriptomics of atrazine-tolerant and sensitive alfalfa varieties under atrazine stress by Yingao Li, Chunyang Dong, Zeshan Zulfiqar, Haojie Wang, Jiading Lu, Xiaoxia Zhang, Jun Li, Yinghua Shi, Chengzhang Wang, Xiaoyan Zhu, Hao Sun

“…In WL363, 2,937 genes were upregulated and 4,237 genes were downregulated in the shoot parts, while 5,316 genes were upregulated and 7,977 genes were downregulated in the roots. …”
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Identification and isolation pipeline for single cell transcriptomic of magnetically enriched tumor cells by Peng Liu, Sitian He, Mette Ø. Agerbæk, Ali Salanti, Leon W.M.M. Terstappen, Pascal Jonkheijm, Michiel Stevens

“…Introduction: The transcriptomic analysis of circulating tumor cells provides valuable insights into cancer metastasis, heterogeneity and the identification of drugable targets. …”
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Unveiling Key Biomarkers and Mechanisms in Septic Cardiomyopathy: A Comprehensive Transcriptome Analysis by Zhao D, Zhuang J, Wang L, Wu L, Xu W, Zhao L, Hong J, Jin W, Miao C

“…Functional enrichment analysis was performed to uncover relevant signaling pathways, while single-cell RNA sequencing was used to examine key genes and regulatory mechanisms associated with SCM.Results: A total of 374 differentially expressed genes (DEGs) were identified, with 268 genes up-regulated and 106 genes down-regulated. …”
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