Dietary inulin supplementation modifies significantly the liver transcriptomic profile of broiler chickens. by Natalia Sevane, Federica Bialade, Susana Velasco, Almudena Rebolé, Maria Luisa Rodríguez, Luís T Ortiz, Javier Cañón, Susana Dunner

“…The current study investigated the differences in the hepatic transcriptome profiles between chickens supplemented with inulin (a storage carbohydrate found in many plants) and controls. …”
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Impact of perinatal factors on T cells and transcriptomic changes in preterm infant brain injury by Xiaoli Zhang, Yu Yang, Yiran Xu, Liuji Chen, Ming Niu, Jinjin Zhu, Shan Zhang, Yanan Wu, Bingbing Li, Lingling Zhang, Juan Song, Falin Xu, Dan Bi, Xin Zhao, Changlian Zhu, Xiaoyang Wang

“…In the third cohort, transcriptome sequencing identified differentially expressed genes and pathways in infants with brain injury, highlighting immune-related changes. …”
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Changes in texture and lignin during different developmental stages of mulberries and transcriptome analysis by WANG Binbin, DAI Xianglong, DU Kaiqun, SHEN Zixin, WANG Hui, GAO Yanxia

“…[Results] As the berries ripened and softened, their hardness gradually decreased, ranging from 3.00 to 50.64 N, while elasticity gradually increased, ranging from 1.86 to 4.41 mm. …”
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Transcriptomic profiles reveal hormonal regulation of sugar-induced stolon initiation in potato by Xiaoqing Wang, Kaifeng Zheng, Tiancang Na, Guangji Ye, Shengcheng Han, Jian Wang

“…Abstract Potato (Solanum tuberosum L.) is one of the world’s most important non-cereal food crops, with stolon development playing a crucial role in determining tuber yield. While some studies have examined the effects of sugars on potato stolon growth, their influence—particularly that of sucrose—on early stolon development remains unclear. …”
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Understanding Host–Pathogen Interactions in Congenital Chagas Disease Through Transcriptomic Approaches by Tatiana M. Cáceres, Luz Helena Patiño, Juan David Ramírez

“…Chagas disease, caused by <i>Trypanosoma cruzi</i>, is a parasitic zoonosis with significant health impacts, particularly in Latin America. While traditionally associated with vector-borne transmission, increased migration has expanded its reach into urban and non-endemic regions. …”
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Integrating Deep Learning and Transcriptomics to Assess Livestock Aggression: A Scoping Review by Roland Juhos, Szilvia Kusza, Vilmos Bilicki, Zoltán Bagi

“…This scoping review assesses the current use of these two methods for aggression research across livestock species and identifies trends while revealing unaddressed gaps in existing literature. …”
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Single-cell analysis reveals significant transcriptomic alterations in preclinical Crohn’s disease by Dimitrios Kioroglou, Leire Egia-Mendikute, Asis Palazon, Asis Palazon, Manuel Barreiro-de Acosta, Iago Rodríguez-Lago, Iago Rodríguez-Lago, Urko M. Marigorta, Urko M. Marigorta

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Rapid Alterations in Perirenal Adipose Tissue Transcriptomic Networks with Cessation of Voluntary Running. by Gregory N Ruegsegger, Joseph M Company, Ryan G Toedebusch, Christian K Roberts, Michael D Roberts, Frank W Booth

“…From the 10th to 11th week of age, one group of rats had continued wheel access, while the other group had one week of wheel locking. …”
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Transposon insertion in pmel17 rewired skin and muscle transcriptomes in Mozambique tilapia by Fei Sun, Le Wang, Gen Hua Yue

“…Specifically, DEGs related to growth factor binding exhibited a down-regulation, while those related to lipid metabolism showed an up-regulation in mutant genotypes. …”
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Single-cell transcriptomics uncovers key immune drivers of vaccine efficacy in cattle by Annaleise Wilson, Pâmela A. Alexandre, Aaron M. Brice, Brad C. Hine, Aaron Ingham, Thibault P. R. A. Legrand, Caroline Royle, Dominic Niemeyer, Antonio Reverter, Stuart E. Denman, Ryan J. Farr

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Transcriptomic and physiological biochemical analysis reveals the impact of polystyrene nanoplastics on the quality of nuts by Weijie Chen, Xiao Liu, Xuanzi Zhang, Ying Zhang, Xinyi Ma, Jiasheng Wu

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Transcriptome Analysis Reveals Significant Differences in Gene Expression of Malignant Pheochromocytoma or Paraganglioma by Yong Joon Suh, Jung Ho Park, Sanchir-Erdene Bilegsaikhan, Dong Jin Lee

“…TCGA carries data pertaining to multigenomic analysis of 173 PC/PG surgical resection samples while the COMETE cohort contains data involving 188 PC/PG surgical resection samples. …”
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Characterizing differences in the muscle transcriptome between cattle with alternative LCORL-NCAPG haplotypes by Fernanda Martins Rodrigues, Leif E. Majeres, Anna C. Dilger, Joshua C. McCann, Christopher J. Cassady, Dan W. Shike, Jonathan E. Beever

“…Notably, LCORL and genes known to be important regulators of growth such as IGF2 were upregulated in QQ individuals, while genes associated with adiposity such as FASN and LEP were downregulated, reflecting the increase in lean growth associated with this locus. …”
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Race-related host and microbe transcriptomic signatures in triple-negative breast cancer by Roshan Kumar, Susan Duyar-Ayerdi, Aishwarya Sundaresan, Vinodh Srinivasasainagendra, Chandra Sekhar Pedamallu, Michael Behring, Darshan Shimoga Chandrashekar, Isam-Eldin Eltoum, Sooryanarayana Varambally, Hemant K. Tiwari, Sadeep Shrestha, Paul L. Auer, Lubna N. Chaudhary, John R. Kirby, Clayton Yates, Upender Manne, Akinyemi I. Ojesina

“…Abstract Triple-negative breast cancer (TNBC) shows racial disparities, with higher incidence in women of African ancestry (AA) compared to European ancestry (EA). Meta-transcriptomic analysis of TNBC tumor tissues from AA (n = 17) and EA (n = 19) subjects revealed distinct microbial landscapes. …”
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Proteomics and transcriptomics combined reveal specific immunological markers in autoimmune thyroid disease by Xia Chen, Hui Chen

“…Through the combined analysis of transcriptomics and proteomics, key genes IGHG3, ISG15, and ZNF683 were identified. …”
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Transcriptomic, and metabolic profiling reveals adaptive mechanisms of Auricularia heimuer to temperature stress by Chenhong Nie, Shiyan Wei, Shengjin Wu, Liangliang Qi, Jing Feng, Xiaoguo Wang

“…Here, we performed a comprehensive morphologic, transcriptomic, and metabolic analysis of A. heimuer mycelium exposed to different temperatures over a long period of time. …”
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ProbC: joint modeling of epigenome and transcriptome effects in 3D genome by Emre Sefer

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Comparative phenotypic, physiological, and transcriptomic responses to drought and recovery in two Fraxinus species by Tae-Lim Kim, Hyemin Lim, Kyungmi Lee, Michael Immanuel Jesse Denison, Sathishkumar Natarajan, Changyoung Oh

“…The activity of antioxidant enzymes (SOD, CAT, APX) was more responsive and recovered more efficiently in F. rhynchophylla, while F. chiisanensis had a weaker and delayed response. …”
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Combined Genomic and Transcriptomic Screening of Candidate Genes for Asymmetric Oviduct Development in Hens by Ruijie Li, Xiang Song, Xiao Lin, Mingli Deng, Yin Liu, Tuoyu Geng, Daoqing Gong, Minmeng Zhao, Long Liu

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Transcriptomic responses to transportation stress in the juvenile Chinese sea bass (Lateolabrax maculatus) by Yue Su, Sarinpan Kokau, Xiao-Ning Zhang, Yun-Wei Dong

“…Transcriptome analysis revealed that 485 and 627 differentially expressed genes (DEGs) were determined in the brain and liver from sea bass after transportation stress, respectively. …”
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