Transcriptomic and metabolomic responses of maize under conventional and biodegradable microplastic stress by Yuanze Sun, Jingxi Zang, Siyuan Xie, Mochen Wu, Jianguo Tao, Tanveer M. Adyel, Xinyu Du, Si Li, Jie Wang

“…Exposure to microplastics induced the production of antioxidant enzymes and antioxidants at varying levels in the maize. While the maize antioxidant systems were induced against biodegradable microplastic exposure, maize photosynthesis was relatively more important for conventional microplastic treatments. …”
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Behavioral and transcriptomic responses of wild least horseshoe bats to artificial light by Yingchun Deng, Bo Luo, Wenqin Liu, Yicheng Zhu, Hui Wang, Jing Wang, Feng Li, Huimin Gao, Mengzhouran He, Hanyu Zhang, Yunke Jiang, Jiang Feng

“…Summary: Artificial light has altered nighttime environments, jeopardizing the fitness of organisms. While many nocturnal animals avoid artificial light, the molecular mechanisms behind this phenomenon remain elusive. …”
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Physiological and Transcriptomic Analysis of a Sepal Mutant in <i>Phalaenopsis</i> by Yu Qi, Yenan Wang, Fei Dong, Jiao Zhu, Xiaohui Lv

“…Flower type mutants serve as critical biological models for investigating the regulatory mechanisms of MADS-box genes in floral organ development, while simultaneously constituting essential genetic resources for molecular breeding programs. …”
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Identification of predictors for bacterial meningitis diagnosis based on transcriptomics and genetic analysis by Hexiang Jiang, Xibing Yu, Jingyan Fan, Houhui Song, Yang Yang

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Single−cell transcriptomic landscape of sciatic nerve after transection injury by Yiben Ouyang, Mingqian Yu, Tieyuan Zhang, Haofeng Cheng, Liang Zuo, Haolin Liu, Yanjun Guan, Ao Liu, Jiajie Chen, Ruichao He, Sice Wang, Tianqi Su, Yixiao Tan, Yuhui Cu, Xiaochun Zhang, Xiaoyang Fu, Junli Wang, Jinjuan Zhao, Jiang Peng, Yu Wang

“…Vascular remodeling commenced from Day 7, while Glis progressively transitioned to mature myelinating states (Gli2/Gli5) by Day 14. …”
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SpaMask: Dual masking graph autoencoder with contrastive learning for spatial transcriptomics. by Wenwen Min, Donghai Fang, Jinyu Chen, Shihua Zhang

“…Recent advancements in spatial resolved transcriptomics (SRT) have enabled the analysis of gene expression while preserving the spatial context within tissues. …”
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Seasonal transcriptomic shifts reveal metabolic flexibility of chemosynthetic symbionts in an upwelling region by Isidora Morel-Letelier, Benedict Yuen, Luis H. Orellana, A. Carlotta Kück, Yolanda E. Camacho-García, Minor Lara, Matthieu Leray, Laetitia G. E. Wilkins

“…Dissimilatory methanol oxidation genes were upregulated before upwelling, while sulfide oxidation genes were upregulated during upwelling. …”
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Comparative analysis of translatomics and transcriptomics in the longissimus dorsi muscle of Luchuan and Duroc pigs. by Songtao Su, Hailong Hu, Kang Liu, Siqi Liu, Zupeng Luo, Jingsu Yu, Tianyu Jiang, Xiangling Li, Chang Sun, Lin Yu, Yuehui Liang, Lei Zhou

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Comparative meta-analysis of barely transcriptome: Pathogen type determines host preference. by Zahra Soltani, Ali Moghadam, Mohammadreza Shamekh

“…Fungi promote pathogenesis, while aphids either weaken or strengthen the infection. …”
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Transcriptomic HEPN1 signatures predict treatment response in low grade glioma by Lei Jiao, Shuhua Fang, Jianbo Zhang

“…By leveraging comprehensive single-cell transcriptomic approaches, this investigation seeks to establish HEPN1 as a pivotal biomarker while examining its utility in directing ferroptosis-targeted therapeutic interventions for glioma patients. …”
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Integrated analysis of chromatin and transcriptomic profiling of the striatum after cerebral hypoperfusion in mice by Shijia Le, Fengyiyang Xu, Zhi Luo, Weihao Shi, Shuangshuang Lu, Zengyu Zhang, Zimin Guo, Wenshi Xu, Mingqi Yang, Tianyi Li, Xu Li, Kun Liang, Lei Zhu

“…Conclusions Our findings indicate that upregulated pathways in the striatum following BCAS-induced CCH are driven by epigenetic changes, while downregulated pathways occur independently of these modifications. …”
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Transcriptome and metabolome profiling reveal the inhibitory effects of food preservatives on pathogenic fungi by Zhenxia Shi, Ni Zhan, Ming Ma, Zhen Wang, Xunyou Yan, Rumeng Li, Xuejuan Liu

“…Similarly, 0.5% sec-butylamine, 1.0% citric acid, and 0.6% potassium sorbate completely inhibited A. alternata, while 1.0% sec-butylamine, 1.2% citric acid, and 0.8% potassium sorbate completely inhibited T. funiculosus. …”
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Deep Learning-Enabled Integration of Histology and Transcriptomics for Tissue Spatial Profile Analysis by Yongxin Ge, Jiake Leng, Ziyang Tang, Kanran Wang, Kaicheng U, Sophia Meixuan Zhang, Sen Han, Yiyan Zhang, Jinxi Xiang, Sen Yang, Xiang Liu, Yi Song, Xiyue Wang, Yuchen Li, Junhan Zhao

“…Spatially resolved transcriptomics enable comprehensive measurement of gene expression at subcellular resolution while preserving the spatial context of the tissue microenvironment. …”
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ABA-induced alternative splicing drives transcriptomic reprogramming for drought tolerance in barley by Anna Collin, Hubert Matkowski, Ewa Sybilska, Asmarany Biantari, Oliwia Król, Agata Daszkowska-Golec

“…Physiological analyses demonstrated that time- and dose-optimized ABA applications improved yield parameters, including grain weight and seed area, while mitigating spike sterility under drought conditions. …”
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Transcriptome signature in the blood of neuromyelitis optica spectrum disorder under steroid tapering by Ryohei Yamamura, Makoto Kinoshita, Yoshiaki Yasumizu, Yoshiaki Yasumizu, Yoshiaki Yasumizu, Tomohiro Yata, Keigo Kihara, Daisuke Motooka, Daisuke Motooka, Naoyuki Shiraishi, Yasuko Sugiyama, Shohei Beppu, Hisashi Murata, Naoshi Koizumi, Itsuki Sano, Toru Koda, Tatsusada Okuno, Hideki Mochizuki

“…Moreover, after steroid tapering, in non-relapsed patients, genes with increased expression were enriched in inflammatory pathways, represented by interferon signaling, while genes with decreased expression were enriched in pathways related to IL-10 and glucocorticoid receptors. …”
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Combining Transcriptomics and Proteomics to Screen Candidate Genes Related to Bovine Birth Weight by Xiuyuan Wang, Ruili Liu, Zhenpeng Chen, Renzheng Zhang, Yanfang Mei, Xiuping Miao, Xuejin Bai, Yajuan Dong

“…Furthermore, we identified 53 genes and proteins exhibiting significant co-expression across both transcriptomic and proteomic datasets; among these, 40 were co-upregulated, 8 co-downregulated, while 5 displayed upregulation at the protein level despite downregulation at the mRNA level. …”
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Transcriptomic profiling and bioinformatic insights into myocardial injury following aneurysmal subarachnoid hemorrhage by Zuoli Wu, Zuoli Wu, Wenbo He, Weihao Ye, Shang Xu, Shengwei Wei, Baozi Huang, Pingping Li, Yanyan Tang, Chao Qin, Ying Liu, Ziming Ye

“…The lncRNAs with the highest connectivity were CELSR1-204, SLCO2B1-212, AEN-204, PPFIA4-205, and MIAT-219, while the mRNAs with the highest connectivity were CHI3L1, ADORA2A, PAX8, VWA3B, and KCNE1. …”
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Effects of graphene on morphology, microstructure and transcriptomic profiling of Pinus tabuliformis Carr. roots. by Xiao Zhang, Huifen Cao, Haiyan Wang, Runxuan Zhang, Haikuan Jia, Jingting Huang, Jianguo Zhao, Jianzhong Yao

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A Transcriptomic Dataset of Embryonic Murine Telencephalon of Fmr1-Deficient Mice by Sara Ebrahimiazar, Takako Kikkawa, Yohei Minakuchi, Satoshi Miyashita, Shyu Manabe, Mikio Hoshino, Atsushi Toyoda, Noriko Osumi

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Probabilistic harmonization and annotation of single‐cell transcriptomics data with deep generative models by Chenling Xu, Romain Lopez, Edouard Mehlman, Jeffrey Regier, Michael I Jordan, Nir Yosef

“…Abstract As the number of single‐cell transcriptomics datasets grows, the natural next step is to integrate the accumulating data to achieve a common ontology of cell types and states. …”
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