GWAS combined with transcriptomics revealed key regulatory genes for inflorescence traits and fruit set rate in Litchi (Litchi chinensis Sonn.) by Fachao Shi, Kan Huang, Yonghua Jiang, Hailun Liu, Yingjie Wen, Qian Yan

“…Joint analysis of GWAS and transcriptomics suggested that the NSLI-associated gene LITCHI016073 (UBP1-associated proteins) might regulate inflorescence development by influencing gibberellin signaling, while NFFI -associated genes LITCHI019855 (Solute carrier family), LITCHI011125 (SEC3A), LITCHI025977 (Acid phosphatase), and LITCHI023264 (Enolase) affected the development and number of female florets. …”
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Transcriptome Analysis Reveals the Molecular Mechanism Involved in Carotenoid Absorption and Metabolism in the Ridgetail White Prawn <i>Exopalaemon carinicauda</i> by Yumin Han, Yang Yu, Chengsong Zhang, Shihao Li, Jianbo Yuan, Fuhua Li

“…In the muscle, the expression of the <i>FABP</i> gene was significantly upregulated, while several actin and troponin genes were significantly downregulated. …”
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Transcriptomic profiles of Crandell-Rees feline kidney cells infected with Varicellovirus felidalpha-1 (FHV-1) field and vaccine strains by Emily Kwan, Alistair R. Legione, Carol A. Hartley, Joanne M. Devlin

“…Genes encoding histone proteins were upregulated, while genes involved in cell adhesion and migration processes were downregulated during infections with FHV-1. …”
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Transcriptome Analysis of Effect of Cordyceps militaris Aqueous Extract in Human Gastric Cancer Cell BGC-823 on Different RCD Pathways by Mingqi CUI, Kaiwen YU, Yang SONG, Fangxu XU, Shenghou WANG, Ze WANG

“…Cytological examination revealed typical apoptotic morphological characteristics in gastric cancer cells treated with the XG water extract, with an early apoptotic rate reaching 24.8%, while cell cycle arrest occurred at the G2/M stage. qRT-PCR showed that the expression of BCL2, BCL2L1, CASP3, CASP9, and XIAP was significantly inhibited (P<0.01), whereas that of ENDOG and AIF was significantly upregulated (P<0.01), consistent with the results of transcriptome sequencing. …”
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Elucidating the Molecular Mechanisms of Physiological Fruit Abscission in <i>Actinidia arguta</i> Through Comparative Transcriptomics and Transient Genetic Transformation by Pengqiang Yuan, Yanli Wang, Yining Sun, Guoliang Liu, Hongyan Qin, Shutian Fan, Yiping Yan, Bowei Sun, Wenpeng Lu

“…AUX signaling diverged predominantly during early development, while ETH, BR, and JA pathways varied across multiple stages. …”
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Comparative transcriptomics reveals the key pathways and genes of cadmium accumulation in the high cadmium-accumulating rice (Oryza Sativa L.) line by Huan Yang, Haiying Yu, Shengwang Wang, Huagang Huang, Daihua Ye, Xizhou Zhang, Tao Liu, Yongdong Wang, Zicheng Zheng, Tingxuan Li

“…H8 and N4 are sister lines that diverged from the same parents, while the molecular mechanisms underlying the genotypic differences in Cd enrichment between the two rice lines remains unclear. …”
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Elucidation of fruit cracking mechanism in bael [Aegle marmelos (L.) Correa.] using physico-biochemical and de novo transcriptomic approaches by Vasanth Vinayak Vara Prasad, V.B. Patel, M.K. Dhakar, Bikash Das, Sujit Kumar Bishi, V.P. Bhadana, G.P. Mishra, Vishal Mhetre, S.K. Singh, Vishal Nath, Ram Asrey, Devendra Pandey

“…Interestingly, aquaporin-encoding genes were found significantly upregulated in the cracking stage, while genes involved in MAPK signaling showed higher expression in the susceptible genotype. …”
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Unveiling Salt Tolerance Mechanisms and Hub Genes in Alfalfa (<i>Medicago sativa</i> L.) Through Transcriptomic and WGCNA Analysis by Fengdan Wang, Hanfu Wu, Mei Yang, Wen Xu, Wenjie Zhao, Rui Qiu, Ning Kang, Guowen Cui

“…In the above, comparisons between varieties were conducted based on the relative values of the indicators in relation to their controls. Transcriptomic analysis revealed that under salt stress, Longmu801 had 16,485 differentially expressed genes (DEGs) relative to its control, while WL168 had 18,726 DEGs compared to its control. …”
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Integrative transcriptomic and metabolomic reveals squalene alleviating the inflammatory response and enhancing immunity of hybrid grouper (♀ Epinephelus fuscoguttatus × ♂ E. lance... by Xiaobo Yan, Simiao Pan, Xiangxiang Suo, Weibin Huang, Tao Li, Shuang Zhang, Yuanzhi Yang, Beiping Tan, Xiaohui Dong

“…Our previous study on plant oil substitution for fish oil found that corn oil induced inflammatory responses in grouper, while olive oil was effective in anti-inflammatory and immune enhancing. …”
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Transcriptomic analyses reveal new genes and networks response to H5N1 influenza viruses in duck (Anas platyrhynchos) by Yin-hua HUANG, Hua-peng FENG, Li-ren HUANG, Kang YI, En-guang RONG, Xiao-yun CHEN, Jian-wen LI, Zeng WANG, Peng-yang ZHU, Xiao-juan LIU, Xiao-xue WANG, Jia-xiang HU, Xin LIU, Hua-lan CHEN, Jun WANG, Ning LI

“…., A/goose/Hubei/65/05, GS/65) are weakly pathogenic, while the others (i.e., A/duck/Hubei/49/05, DK/49) are highly pathogenic to their natural hosts. …”
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Physiological and transcriptomic-based analysis reveal the common and specific pathways of clove basil (Ocimum gratissimum) organs in response to cadmium stress by Bin Wang, Yanhui Xiao, Xiao Yuan, Yukun Wang, Dengyue Jiang, Zhaoxia Zhan, Jinming He

“…Transcriptomic profiles demonstrated that the responses of different organs to Cd stress were significantly distinct. …”
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Identification of differentially expressed genes and proteins related to diapause in Lymantria dispar: Insights for the mechanism of diapause from transcriptome and proteome analys... by Qing Xie, Xiaofan Ma, Yafei Li, Wenzhuai Ji, Fengrui Dou, Xiue Zhu, Juan Shi, Yixia Cao

“…We performed bioinformatics analysis on four Asian populations of spongy moth and one Asian-European hybrid population through a transcriptome analysis combined with proteomics. The results revealed that 1,842 genes were differentially expressed upon diapause initiation, while 264 genes were identified upon diapause termination. …”
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Deep RNA sequencing of pectoralis muscle transcriptomes during late-term embryonic to neonatal development in indigenous Chinese duck breeds. by Chunhong Zhu, Weitao Song, Zhiyun Tao, Hongxiang Liu, Wenjuan Xu, Shuangjie Zhang, Huifang Li

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Effects of Haematococcus pluvialis on growth performance, hepatopancreatic transcriptome and resistance to ammonia-nitrogen stress of pacific white shrimp (Litopenaeus vannamei) by Baoyang Chen, Anqi Chen, Haiqi Pu, Wei Zhao, Yongkang Chen, Yanmei Li, Peinan Zhang, Xingyan Hou, Liuya Feng, Beiping Tan, Jin Niu

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Transcriptomic Profiling of Buds Unveils Insights into Floral Initiation in Tea-Oil Tree (<i>Camellia oleifera</i> ‘changlin53’) by Hongyan Guo, Zongshun Zhou, Jian Zhou, Chao Yan, Wenbin Zhong, Chang Li, Ying Jiang, Yaqi Yuan, Linqing Cao, Wenting Pan, Jinfeng Wang, Jia Wang, Tieding He, Yikai Hua, Yisi Liu, Lixian Cao, Chuansong Chen

“…UPLC-MS/MS was used to analyze endogenous gibberellin (GA) concentrations, while transcriptomic analysis was performed to reveal the underlying transcriptional regulatory network. …”
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Transcriptomic Insights into Adaptive Strategies of Klebsiella pneumoniae Co-Producing KPC-2 and NDM-5 Carbapenemases Under Meropenem Stress by Dai L, Zhang H, Cao Y, Ding J, Tang J, Xiao Z, Chen Z, Ling J, Zou M, Cao X, Lin L, Xu Z, Liu W, Chen D, Yuan P

“…Transcriptomic analysis mapped stress-responsive pathways and DEGs, whereas qPCR validated carbapenemase gene expression and plasmid copy number variation. …”
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Exploring the Latent Information in Spatial Transcriptomics Data via Multi‐View Graph Convolutional Network Based on Implicit Contrastive Learning by Sheng Ren, Xingyu Liao, Farong Liu, Jie Li, Xin Gao, Bin Yu

“…Abstract Latest developments in spatial transcriptomics enable thoroughly profiling of gene expression while preserving tissue microenvironment. …”
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Selenium Alleviates Cadmium Toxicity by Regulating Carbon Metabolism, AsA-GSH Cycle, and Cadmium Transport in <i>Glycyrrhiza uralensis</i> Fisch. Seedlings by Xuerong Zheng, Jiafen Luo, Xin Li, Chaoyue Zhang, Guigui Wan, Caixia Xia, Jiahui Lu

“…Cadmium (Cd) accumulation in plants hinders their growth and development while posing significant risks to human health through food chain transmission. …”
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Transcriptome-wide regulation of folate on neural mRNA m6A methylome via carbon metabolism in Drosophila and mammals by Anrui Liu, Zhengyi Huo, Zihe Xu, Sisi Liu, Yuting Jiao, Rui Li, Yi Lu, Meng Yang, Jia Huang, Chen Huang, Xiaoyun Wang

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Molecular mechanisms of flowering time differentiation revealed by transcriptomic sequencing and de novo analysis in Chinese invasive populations of Ambrosia artemisiifolia by Xiao-Feng Yang, Xiao-Meng Li, Pär K. Ingvarsson, Chao Xi, Wan-Jin Liao

“…Six genes, including FKF1, FT, FUL, MAF2, WNK4 and WNK5, were inferred to promote flowering, while 5 genes, FBH3, FLK, NCL(1), POL2A, and ZHD4, likely repress flowering, based on their expression patterns in relation to latitude and sampling times. …”
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