Sperm-borne mRNAs: potential roles in zygote genome activation and epigenetic inheritance by Betina González, Candela Rocío González

“…Here, we curated mouse transcriptomic data from mature sperm and selected the most abundant mRNAs (above the 0.7 quantile). …”
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Integrative Analysis of Transcriptomic and Metabolomic Profiles Identifies Distinct Dynamic Changes in Primary and Secondary Metabolites in Grape Berries Under Fruit-Specific Light... by Xuan Luo, Jiahao Wu, Hongjuan Li, Xintong Wang, Wendi Wang, Hui Li, Kunfeng Li, Songling Bai

“…Light influences fruit development and quality through two primary pathways: its effect on vegetative organs, which subsequently impacts the fruit, and its direct effect on the fruit itself. While the mechanism of the former pathway is well-documented, the direct impact of light on fruit has been less studied due to limitations in applying controlled light exposure to preharvest fruit. …”
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Semen Quality, Testicular Cell Apoptosis, and Transcriptome Analysis Following Mild Scrotal Heat Stress in Wugu–Hu Crossbred and Hu Rams by Shikun Chen, Mingxu Jiang, Yanyun Wang, Qingjie Pan, Henry Annandale, Peter Charles Irons, Huansheng Dong

“…Wugu–Hu rams demonstrate more transcriptomic changes. Further GO analysis revealed enrichment in spermatogenesis-related processes, while KEGG analysis identified Oocyte meiosis and cell cycle pathways, with a downregulation of key genes (CDK1, CDK2, CDC20, and PLK1) indicating impaired meiosis in Wugu–Hu rams. …”
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The pseudo-type response regulator gene Clsc regulates rind stripe coloration in watermelon by Dongming Liu, Jinfang Liang, Quanquan Liu, Yaxin Chen, Shixiang Duan, Dongling Sun, Huayu Zhu, Junling Dou, Huanhuan Niu, Sen Yang, Shouru Sun, Jianbin Hu, Luming Yang

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Expression of ABC transporters negatively correlates with ectoine biosynthesis in Halomonas campaniensis under NaCl and ultraviolet mutagenesis treatments revealed by transcriptomi... by Lijuan Qiao, Guoping Shen, Rui Han, Rong Wang, Xiang Gao, Jiangwa Xing, Yanbing Lin, Derui Zhu

“…NaCl induction resulted in a 20-fold increase, while UV treatment led to at least 2.5-fold increases in ectoine production. …”
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Molecular mechanisms of benzophenone-induced toxicity in marine diatoms: Insights from Chaetoceros neogracilis by Jing Yang, Huo Xu, Ziying Li, Zhimeng Xu, Sidney Man Ngai Chan, Yi Yang, Keng Po Lai

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Coupling genome-wide continuous perturbation with biosensor screening reveals the potential targets in yeast isopentanol synthesis network by Qi Xiao, Jingjing Shi, Lixian Wang, Guoping Zhao, Yanfei Zhang

“…Biofuel production through microbial fermentation offers a green, sustainable, and renewable alternative to chemical synthesis. While enhanced production of isopentanol has been achieved in a variety of chassis, the fermentation yield has not yet reached levels suitable for industrial-scale production. …”
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Metabolome integrated with transcriptome, and genome analysis revealed higher accumulations of phytoalexins enhance resistance against Magnaporthe oryzae in new Zhefang rice variet... by Owais Iqbal, Xingrun Yang, Ruoping Wang, Chun Wang, Dandan Li, Jiancheng Wen, Jiasheng Ding, Sauban Musa Jibril, Chengyun Li, Yi Wang

“…Notably, 55% of these metabolites exhibited similar expression patterns across both lines, while 9 DAMs displayed contrasting patterns at 48 h in response to pathogen infection. …”
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Physiological and Transcriptome Analysis Reveal the Underlying Mechanism of Salicylic Acid-Alleviated Drought Stress in Kenaf (<i>Hibiscus cannabinus</i> L.) by Hui Zhang, Guofeng Xu, Samavia Mubeen, Rujian Wei, Muzammal Rehman, Shan Cao, Caijin Wang, Jiao Yue, Jiao Pan, Gang Jin, Ru Li, Tao Chen, Peng Chen

“…In this study, the kenaf seedlings were subjected to physiological and transcriptomic analysis under control (CK), moderate drought stress (D), and moderate drought stress with 1 mM SA (D_SA). …”
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Long-term thermal acclimation enhances heat resistance of Hong Kong catfish (Clarias fuscus) by modulating gill tissue structure, antioxidant capacity and immune metabolic pathways by Cunyu Duan, Dayan Zhou, Ruiqing Feng, Xiaolong Li, Lei Yang, Xinyi Li, Guangli Li, Huapu Chen, Yu Liao, Changxu Tian

“…Transcriptome analysis identified 520 and 463 differentially expressed genes in the NT and HT groups, respectively, in response to acute temperature changes. …”
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Transcriptome and targeted metabolome analysis of lipid profiles, nutrients compositions and volatile compounds in longissimus dorsi of different pig breeds by Zhen Luo, Ting Lai, Yijia Fan, Chengbin Yu, Wei Li, Meng Li, Shenghui Lei, Jing Zhang, Weina Xu, Zhe Wang, Jianxiong Xu

“…Also, the contents of medium-long chain fatty acids and γ-aminobutyric acid (GABA) were higher, while Asp was lower in LD of SW pigs compared with LW pigs (p<0.05). …”
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Dexamethasone’s Clinical Efficacy in Experimental Autoimmune Pancreatitis Correlates with a Unique Transcriptomic Signature, Whilst Kinase Inhibitors Are Not Effective by Ottavia Agrifoglio, Anika Kasprick, Natalie Gross, Marc Wahlig, Emilia Kauffold, Aline Woitas, Artem Vorobyev, Luise Ehlers, Ralf J. Ludwig, Katja Bieber, Robert Jaster

“…In the principal component analysis of pancreatic transcriptomics, poly I:C-injected mice treated with tofacitinib, takinib, or solvent clustered together, while untreated and dexamethasone-treated mice formed separate, unique clusters. (4) Conclusions: Dexamethasone effectively reduced AIP severity, while takinib and tofacitinib were ineffective. …”
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Transcriptomic Profiling Reveals Differences in Slow‐Twitch and Fast‐Twitch Muscles of a Cigarette Smoke‐Exposed Rat Model by Timothy K. H. Fung, Kwok Kuen Cheung, Xia Wang, Benson W. M. Lau, Shirley P. C. Ngai

“…This study aimed to elucidate the histomorphological, biochemical and transcriptomic changes induced by CS on both slow‐twitch and fast‐twitch muscles. …”
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Microbial community structure in lake and wetland sediments from a high Arctic polar desert revealed by targeted transcriptomics. by Magdalena K Stoeva, Stéphane Aris-Brosou, John Chételat, Holger Hintelmann, Philip Pelletier, Alexandre J Poulain

“…While microbial communities play a key role in the geochemical cycling of nutrients and contaminants in anaerobic freshwater sediments, their structure and activity in polar desert ecosystems are still poorly understood, both across heterogeneous freshwater environments such as lakes and wetlands, and across sediment depths. …”
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Transcriptome Profiling Reveals Genetic Basis of Muscle Development and Meat Quality Traits in Chinese Congjiang Xiang and Landrace Pigs by Jiada Yang, Qiaowen Tang, Chunying Sun, Qiuyue Li, Xiaoyu Li, Lu Hou, Yi Yang, Kang Yang

“…GO and KEGG pathway analyses revealed that up-regulated genes in CX pigs were significantly enriched in immune response pathways (adjusted <i>p</i>-value < 0.01), while down-regulated genes were primarily associated with myosin complex formation and <i>PPAR</i> signaling pathway. …”
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The APOE isoforms differentially shape the transcriptomic and epigenomic landscapes of human microglia xenografted into a mouse model of Alzheimer’s disease by Kitty B. Murphy, Di Hu, Leen Wolfs, Susan K. Rohde, Gonzalo Leguía Fauró, Ivana Geric, Renzo Mancuso, Bart De Strooper, Sarah J. Marzi

“…Of its three isoforms, APOE2 is thought to be protective, while APOE4 increases AD risk. We hypothesised that the isoforms change gene regulatory patterns that link back to biological function by shaping microglial transcriptomic and chromatin landscapes. …”
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Hepatic transcriptome profiling unveils candidate genes in cattle with liver abscesses under the influence of beef genetics in dairy cattle. by Luana D Felizari, Sydney M Bowman, Chiquito J Crasto, Jhones O Sarturi, Dale R Woerner, Bradley J Johnson

“…Notably, the most highly up-regulated genes were FGF23, NXPH4, and CYP7A1, while EPHA6, CD70, and INHBA showed the most significant downregulation. …”
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Differential responses of the intestine and liver transcriptome to high levels of plant proteins in diets for large yellow croaker (Larimichthys crocea) by Qiaozhen Ke, Qiaozhen Ke, Yin Li, Huasong Weng, Baohua Chen, Jiaying Wang, Ji Zhao, Ji Zhao, Pengxin Jiang, Peng Xu, Tao Zhou

“…Current fish meal - based feeds face issues like high cost and resource depletion, while plant protein sources have potential but also controversies. …”
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The Potential Role of GJA1 and SPP1 Expressed by the Endometrium Based on Single Cell Transcriptome Analysis in Endometrial Infertility by Zhenzhen Lu, Qianqian Tang, Chunyan Chen, Xiaojie Zhao, Ying Gao, Qiongqiong Wei

“…Background: Endometrial infertility accounts for a significant proportion of infertility cases, and single-cell transcriptome data have revealed that hub genes may play an important role during pregnancy. …”
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Crotonylation-Related Prognostic Model of Esophageal Squamous Cell Carcinoma Based on Transcriptome Analysis and Single-Cell Sequencing Analysis by Lin RY, Chen RP, Lin FQ

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