Whole-transcriptome sequencing reveals the effects of acupuncture on early embryos post-IVF-ET in poor ovarian response by Jianheng Hao, Yuemeng Zhao, Xuan Liu, Huichao Xu, Liying Liu, Haijun Wang, Ying Lan, Laixi Ji

“…Vaginal smear tests were conducted to monitor estrous cycle changes, while oocyte retrieval, ovarian wet weight, and ovarian index were assessed. …”
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Machine learning integration of single-cell and bulk transcriptomics identifies fibroblast-driven prognostic markers in colorectal cancer by Ning Zhang, Ruiyan Liu, Siya Wu, Chenxi Feng, Boxiang Wang, Qiaoqiao Zheng, Linru Jie, Ruihua Kang, Xiaoli Guo, Xiaoyang Wang, Shaokai Zhang, Jiangong Zhang

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Single-cell transcriptomic reveals the peritoneal microenvironmental change in long-term peritoneal dialysis patients with ultrafiltration failure by Xiangwen Diao, Cuixia Zhan, Hongjian Ye, Haishan Wu, Chunyan Yi, Jianxiong Lin, Haiping Mao, Wei Chen, Xiao Yang

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Transcriptomic Profiling Reveals Altered Expression of Genes Involved in Metabolic and Immune Processes in NDV-Infected Chicken Embryos by Malarmathi Muthusamy, Kannaki T. Ramasamy, Sunday Olusola Peters, Srinivasan Palani, Vasudevan Gowthaman, Murali Nagarajan, Sivakumar Karuppusamy, Vasanthakumar Thangavelu, Thiruvenkadan Aranganoor Kannan

“…Methods: This study employed transcriptome analysis to investigate host–pathogen interactions by analyzing gene expression changes in NDV-infected chicken embryos’ lungs. …”
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Unraveling breast cancer response to neoadjuvant chemotherapy through integrated genomic, transcriptomic, and circulating tumor DNA analysis by Menghao Dong, Jian Chen, Nannan Lu, Song Wang, Wenhui Wei, Ziming Wang, Jinnan Wang, Jinguo Zhang, Xinghua Han, Fufeng Wang, Qiuxiang Ou, Hua Bao, Xiaopeng Ma, Benjie Shan, Yueyin Pan

“…Responsive tumors exhibited immune activation and downregulated PI3K-Akt and AGE-RAGE pathways, while non-pCR tumors showed reduced cytokine and immune receptor activity. …”
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Root Transcriptome Analysis Identifies Salt-Tolerance Genes in Sweet Corn Chromosome Segment Substitution Lines (CSSLs) by Zili Zhang, Xuxuan Duan, Pengfei Liu, Qingchun Chen, Wei Sun, Xiaorong Wan, Yixiong Zheng, Jianting Lin, Feng Jiang, Faqiang Feng

“…The results indicated that D55 exhibited enhanced seedling height, root length, fresh weight, relative chlorophyll content, and antioxidant enzyme activities, while showing reduced malondialdehyde accumulation in comparison to D96. …”
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Hepatotoxicity in Carp (<i>Carassius auratus</i>) Exposed to Perfluorooctane Sulfonate (PFOS): Integrative Histopathology and Transcriptomics Analysis by Lin Tang, Guijie Hao, Dongren Zhou, Yunpeng Fan, Zihao Wei, Dongsheng Li, Yafang Shen, Haoyu Fang, Feng Lin, Meirong Zhao, Haiqi Zhang

“…Specifically, DEGs related to lipid metabolism showed significant changes, while those involved in energy metabolism indicated disrupted ATP production and mitochondrial function. …”
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Joint analysis of single-cell RNA sequencing and bulk transcriptome reveals the heterogeneity of the urea cycle of astrocytes in glioblastoma by Minfeng Tong, Qi Tu, Lude Wang, Huahui Chen, Xing Wan, Zhijian Xu

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Transcriptome sequencing reveals novel Citrus bark cracking viroid (CBCVd) variants from citrus and their molecular characterization. by Yafei Wang, Sagheer Atta, Xuefeng Wang, Fangyun Yang, Changyong Zhou, Mengji Cao

“…The length of CBCVd from China ranged from 282 to 286 nucleotides, while that of the one from Pakistan ranged from 273 to 277 nucleotides. …”
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Transcriptomic and metabolomic insights into temperature-dependent changes in catechin and anthocyanin accumulation in tea plants with different leaf colors by Jingbo Yu, Qianying Wang, Wenli Wang, Ruihong Ma, Changqing Ding, Kang Wei, Liyuan Wang, Shibe Ge, Yuanzhi Shi, Xin Li

“…Low temperatures enhanced the expression of ANTHOCYANIDIN SYNTHASE (ANS) in ZJ while inhibiting the expression of ANTHOCYANIDIN REDUCTASE (ANR) and LEUCOANTHOCYANIDIN REDUCTASE (LAR). …”
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Transcriptomic and proteomic analysis of the jejunum revealed the effects and mechanism of protocatechuic acid on alleviating Salmonella typhimurium infection in chickens by Sheng Zhang, Qin Wang, Xiangtian Yao, Jingjing Dong, Guanhuo Li, Yingan Zang, Shouqun Jiang, Yibing Wang

“…On 14 and 16 d, birds in Sal and PA were orally challenged with 109 CFU S. typhimurium, while birds in Ctr received an equal amount of PBS. …”
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Transcriptome Profiling Reveals the Effects of Rootstocks on Scion Architecture in <i>Malus domestica</i> Borkh Var. ‘Harlikar’ by Bin Xie, Junhao Li, Jiangtao Zhou, Guodong Kang, Zhongwen Tang, Xiaojian Ma, Xin Li, Jing Wang, Yanzhen Zhang, Yanhui Chen, Sumiao Yang, Cungang Cheng

“…We also explored the mechanism of scion architecture formation using transcriptomics based on different scion/rootstock combinations. …”
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Analysis of transcriptome and chromatin accessibility changes during the differentiation of human embryonic stem cells into neural progenitor cells by LI Linying, CAI Xiaodong, TONG Ran, YANG Chen, WANG Zhiming, HE Xiaoyu, MA Ziyue, ZHANG Feng, LI Lingjie, ZHOU Junmei

“…The cell phenotypes were identified by reverse transcription-quantitative real-time PCR (RT-qPCR) and immunofluorescence (IF) staining. Transcriptome sequencing (RNA-seq) was conducted to detect and analyze the differentially expressed genes (DEGs) between hESCs and NPCs. …”
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Circadian synchronization differentially modifies cytokine-mediated transcriptomic remodeling and cell death in INS-1 cells and mouse islets by Phillip Alexander Keller Andersen, Rasmus H. Reeh, Isabel Sanders, Emilie Bender Overlund, Georgia Katsioudi, Cecilia Jiménez-Sánchez, Emil Zeng Skovhøj, Anniek Frederike Lubberding, Charna Dibner, Thomas Mandrup-Poulsen

“…Synchronization prevented cytokine-mediated cytotoxicity, but not NF-κB activity to a degree comparable to that of KINK-1, while alterations in islet rhythmicity were unaffected by NF-κB inhibition. …”
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Ribosome profiling reveals differences in global translational vs transcriptional gene expression changes during early Candida albicans biofilm formation by Vasanthakrishna Mundodi, Saket Choudhary, Andrew D. Smith, David Kadosh

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Spider predatory aggressiveness exhibits diverse personality and plasticity associations and complex neurophysiological mechanisms by Yi-Chi Li, Yi-Chun Yen, Yuan-Hao Hsu, I-Min Tso

“…We found that nearly half of the individuals exhibited high behavioral plasticity while the others exhibited apparent personality, and results of modeling approach suggests that proactive personality might indeed limit adaptive plasticity. …”
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Adaptation responses to salt stress in the gut of Poecilia reticulata by Hyerim Lee, Hyunjae Yeo, Jihye Park, Keunsoo Kang, Sun-Ju Yi, Kyunghwan Kim

“…Increasing salinity reduced villus length and intestinal diameter in guppies, while zebrafish exhibited damage to villus structure and loss of goblet cells. …”
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Integrated Analysis of Survival, Physiological‐Biochemical, and Transcriptomic Changes Reveals the Impact of Saline Stress on the Freshwater Snail Pomacea canaliculata by Yingtong Chen, Fucheng Yao, Zhaoji Shi, Chunxia Zhang, Jimin Liu, Jiaen Zhang, Zhong Qin

“…In male snails, only MDA content exhibited a significant decrease, while ACHE activity showed a significant increase. …”
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Unraveling the genetic architecture of blueberry fruit quality traits: major loci control organic acid content while more complex genetic mechanisms control texture and sugar conte... by Heeduk Oh, Molla F. Mengist, Guoying Ma, Lara Giongo, Marti Pottorff, Jessica A. Spencer, Penelope Perkins-Veazie, Massimo Iorizzo

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Toxic Effects of Acute Water Selenium Exposure on <i>Litopenaeus vannamei</i>: Survival, Physiological Responses, Transcriptome, and Intestinal Microbiota by Xinghui Luo, Jian Chen, Asare Derrick, Gongyu Li, Hongming Wang, Zhihao Xue, Lili Shi, Shuang Zhang

“…Compared to the CON group, serum Caspase-3 activity significantly increased, while Bcl-2 activity markedly decreased in the S1 and S2 groups (<i>p</i> < 0.05). …”
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