Transcriptomic Analysis of Gibberellin-Mediated Flower Opening Process in Tree Peony (<i>Paeonia suffruticosa</i>) by Bole Li, Qianqian Wang, Zefeng Qiu, Zeyun Lu, Junli Zhang, Qionghua He, Jiajun Yang, Hangyan Zhang, Xiangtao Zhu, Xia Chen

“…In contrast, all flower buds treated with 1000 mg/L GA₃ aborted, while only one flower bud in the control group bloomed after 56 days. …”
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Integrating transcriptomic and metabolomic analyses to characterize the potential function of SLC1A5 in thyroid cancer by Fengling Shan, Lan Wang, Xinyu Lu, Meihong Zhou, Zi Wang, Jingjing Lou, Xingdang Liu

“…SLC1A5 expression in TPC-1 and B-CPAP was knocked down using SLC1A5 siRNA to investigate its effects on cell growth and apoptosis. Transcriptome sequencing and metabolite analysis were carried out in the SLC1A5 siRNA group to identify major transcriptomic or metabolite changes that could lead to apoptosis. …”
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Combined Physiology and Transcriptome Analyses Provide Insights into Malformed Fruit of <i>Cocos nucifera</i> L. by Lilan Lu, Zhiguo Dong, Yuan Zhang, Siting Chen, Qingxin Wu

“…Transcriptomic dissection revealed 6370 functionally annotated differentially expressed genes (DEGs), comprising 4235 upregulated and 2135 downregulated transcripts. …”
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A global overview of transcriptome dynamics during the late stage of flower bud development in Camellia oleifera by Huiyun Song, Zhihao Duan, Heqiang Huo, Xiaoling Wang, Yujuan Wang, Junhui Chen, Liang Jin, Mengfei Lin

“…The study investigated the dynamic changes and regulatory patterns of different tissues within flower buds from flower bud development to flowering, employing a multi-faceted approach that included cellular dissection, analysis of hormone content, and transcriptome analysis. This study demonstrates that ABA and SA, rather than GA3, IAA, ZT, acts as potentially effective endogenous agents to promote flowering in the later stages of flower development, which is a critical period for the maturation of pollen and embryo sacs; while ZT plays a more significant role in the early stages of flower bud development. …”
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Integrated analysis of methylomic and transcriptomic profiles in fetal mouse hypothalamus in response to maternal gestational exposure to arsenic by Xuehua Li, Jinzhong Cui, Xinyu Zhang, Yue Wu, Jiajia Xu, Yonggan Zhao, Sajjad Hussain, Leishan Chen

“…Integrated analysis revealed that genes with hypermethylated promoters tended to be downregulated, while those with hypomethylated promoters were often upregulated, supporting a regulatory association between DNA methylation and gene expression. …”
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Study on molecular mechanism of intervertebral disc degeneration by single cell hdWGCNA combined with transcriptome sequencing by Xuan Zhao, Qijun Wang, Wei Wang, Xiaolong Chen, Shibao Lu

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Transcriptomic Analysis for Key Periods of Radicle Development in Contrasting Soybean Varieties HN75 and HN76 by Fengli Yu, Liang Mi, Dawei Xin

“…These findings unravel mechanisms governing leguminous radicle development while establishing molecular blueprints for engineering cultivation protocols that would enhance soybean sustainability in edaphically constrained environments.…”
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Single-cell transcriptomic profiling reveals diversity in human iNKT cells across hematologic tissues by Reyka G. Jayasinghe, Derek Hollingsworth, Nathan C. Schedler, Emily Landy, Chaiyaporn Boonchalermvichian, Biki Gupta, Hao Yan, Jeanette Baker, Beruh Dejene, Kenneth I. Weinberg, Robert S. Negrin, Melissa Mavers

“…Herein, we delineate the transcriptomic diversity of human iNKT cells from multiple immunologically relevant hematologic tissues. …”
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Integration of multi-omics transcriptome-wide analysis for the identification of novel therapeutic drug targets in diabetic retinopathy by Guoguo Yi, Zhengran Li, Yuxin Sun, Xinyu Ma, Zijin Wang, Jinken Chen, Dong Cai, Ziran Zhang, Zejun Chen, Fanye Wu, Mingzhe Cao, Min Fu

“…HLA-DQ family genes have a frequent occurrence, while RPS26, WFS1 and SRPK1 were validated as the genetic network’s linchpins. …”
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Integrated transcriptome and metabolome analysis of photoperiod effects on testosterone secretion in ChaHua chicken No.2 Roosters by Mengqian Liu, Lei Tan, Xinlu Li, Haojie Li, Yong Zhang, Xiannian Zi, Changrong Ge, Kun Wang

“…This study investigated the impact of light duration on Testosterone secretion in Chahua No.2 roosters, utilizing combined Transcriptome and Metabolome analyses to uncover critical genes, Metabolites, and signaling pathways. …”
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Identification of hub genes regulating seed germination viability in soybean via comparative transcriptome analysis and WGCNA by Long Miao, Lirong Chen, Huihui Gao, Linlin Kong, Mengli Xv, Genhua He, Juan Li, Jinghao Xv, Haowei Zheng, Xv Yang, Pengyu Bai, Jiajia Li, Lijuan Qiu, Xiaobo Wang

“…Seed germination viability is a crucial foundation for soybean storage life and seedling establishment, while its regulatory factors remains largely unexplored. …”
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Construction of dynamic ceRNA regulatory networks in osteogenesis during fracture healing based on transcriptomic analysis by Shuhang Guo, Shen Wang, Shaoxun Yuan, Xinyi Gu, Jin Deng, Chen Huang, Xinyi Zeng, Qingguo Lu, Xiaofeng Yin

“…GO and KEGG enrichment analyses were performed to explore potential biological mechanisms. miRNA-mRNA interactions were predicted using TargetScan, miRWalk, and miRDB, while RNA22 v2 was used for lncRNA-miRNA interactions. …”
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A comprehensive transcriptome based meta-analysis to unveil the aggression nexus of oral squamous cell carcinoma by Soujanya J. Vastrad, Ganesan Rajalekshmi Saraswathy, Jagadish B. Dasari, Gouri Nair, Ashok Madarakhandi, Dominic Augustine, S.V. Sowmya

“…To address this, an integrative meta-analysis of six publicly available transcriptomic profiles, categorized by lymph nodal status, is conducted. …”
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Integration of metabolic and transcriptomic analyses for revealing the galactose metabolism of tobacco (Nicotiana tabacum) under salt stress by Ge Bai, Ge Bai, Hui Zhang, Hui Zhang, Yong Li, Da-Hai Yang, Mingliang Fei, Tao Pang, Yaning Fu, Ai-Guo Yang, Zhen-Yu Wang, Jinbao Gu, He Xie

“…Chlorophyll synthesis was impacted by decreased 5-aminolevulinic acid production, while proline accumulation helped mitigate cell damage. …”
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Transcriptomic, phenotypic and physiological analyses identify candidate regulators of Dendrobium stigma maturation and pollen-stigma interaction by Qian Wu, Shuxian Ren, Yuehong Ruan, Jiaxue Hu, Yin Li, Zongyan Li

“…O-GlcNAc glycosylation was detected in the stigma transcriptome for the first time, potentially linked to kinase activity and immune responses. …”
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A Transcriptomics Approach to Unveil the Antioxidant Effects of Tryptophan on Oocyte Quality Under Oxidative Stress in Pigs by Zhekun Zhu, Yanlong Li, Xinyin Fan, Shuang Cai, Siyu Li, Yutian Wang, Xinyu Wang, Fengjuan Yang

“…The results demonstrated that tryptophan supplementation significantly reduced oxidative stress markers such as H₂O₂ and malonaldehyde (MDA) while restoring key antioxidant enzymes such as superoxide dismutase (SOD), and catalase (CAT) confirming its antioxidant role. …”
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Integrated metabolome and transcriptome analysis reveals key genes and pathways associated with egg yolk percentage in chicken by Wen Li, Yuxing Luo, Shoujia Zhu, Mengyuan Wang, Xuli Zhao, Zhonghua Ning

“…To elucidate the underlying mechanisms that contribute to variations in egg yolk percentage, we performed integrated transcriptome and metabolome analyses on the liver, ovary, and magnum tissues of Rhode Island Red chickens with high and low yolk percentages. …”
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Using WGCNA and transcriptome profiling to identify hub genes for salt stress tolerance in germinating soybean seeds by Lijun Pan, Yifan Chen, Zeyu Ren, Dalia Mohamedkheir Khojely, Dalia Mohamedkheir Khojely, Siyu Wang, Yueming Li, Seifeldin Elrayah Ibrahim, Seifeldin Elrayah Ibrahim, Sujie Fan, Yang Song, Zhuo Zhang, Jian Wei

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The effects and mechanisms of Xiaoyao San on nonalcoholic fatty liver disease rat based on transcriptomics and proteomics analysis by Yunxiao Liu, Shuanghu Wang, Ayesha Younas, Jiaojian Lv, Abdullah Al Mamun, Chuxiao Shao

“…Specifically, XYS down-regulated the expressions of NF-κB, p-NF-κB, FOXO1, TGF-β1, RIP3, and p-MLKL, while up-regulating cAMP, PKA, p-PKA, and PPARα. …”
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Transcriptomics characteristics and differentiation of subcutaneous adipose tissue among Huainan pigs and its hybrid genetic populations by Taotao Yan, Taotao Yan, Mingyang Jia, Jiaxi Li, Xianyong Lan, Liwei Yuan, Baosong Xing, Chuanying Pan, Qingxia Lu, Jing Wang

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