Integrative transcriptomics and single-cell transcriptomics analyses reveal potential biomarkers and mechanisms of action in papillary thyroid carcinoma by Wanchen Cao, Kai Gao, Yi Zhao

“…The collagen signaling pathway was identified as the most dominant pathway, and violin plots demonstrated that ligands COL4A1 and COL4A2 were highly expressed in epithelial cells, while the receptor CD4 showed elevated expression in both tissue stem cells and smooth muscle cells. …”
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Current status of transcriptome sequencing technology in ruminants by Cui JiaYu, Song Lili, Wang Dawei, Liu ZhiLin, Zhang Xin, Jia Zelin, Zhang Yuhang, Xiong Huisheng, Wang Xueli

“…In many parts of the world, safe ruminant production underpins food security, while ruminant meat and milk are important agricultural commodities and a major source of protein requirements in the human diet. …”
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Integrated genomic and transcriptomic analysis of polydactyly in chickens by Zhiying Huang, Xiaomeng Miao, Diyan Li, Jia Liu, Haolin Chen, Yuan Su, Yuan Su

“…Top candidates in polydactylous birds included AUH, SEMA4D, and ROR2, while four-toed birds showed strong signals at RYR2, KITLG, and PGR. …”
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Interaction between the liver transcriptome and gut microbiota in mice during Toxoplasma gondii infection as identified by integrated transcriptomic and microbiome analysis by Yang Zou, He Ma, Xing Yang, Xin-Yu Wei, Chao Chen, Jing Jiang, Tao Jiang

“…Notably, we observed a significant increase in the abundance of Enterobacteriaceae during the acute stage of infection, while the abundance of Lactobacteriaceae was elevated during the chronic stage. …”
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Comparative transcriptomics of pathogenic and non‐pathogenic Listeria species by Omri Wurtzel, Nina Sesto, J R Mellin, Iris Karunker, Sarit Edelheit, Christophe Bécavin, Cristel Archambaud, Pascale Cossart, Rotem Sorek

“…Remarkably, we identified a class of long antisense transcripts (lasRNAs) that overlap one gene while also serving as the 5′ UTR of the adjacent divergent gene. …”
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Effects of hydroxypropyl starch on intestinal health and transcriptome of geese by Pengfei Ye, Wenquan Liu, Xiaotong Tang, Mengxue Liu, Jingfan Han, Xiaoxue Wang, Jie Zhu, Xiaorong He, Xueqi Zhu, Mixia Cao, Lei Zhao, Qingchang Ren

“…The accuracy and reliability of transcriptome sequencing data were confirmed by RT-qPCR. …”
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Transgenerational epigenetic programming of the brain transcriptome and anxiety behavior. by Michael K Skinner, Matthew D Anway, Marina I Savenkova, Andrea C Gore, David Crews

“…An investigation of behavior demonstrated that the vinclozolin F3 generation males had a decrease in anxiety-like behavior, while the females had an increase in anxiety-like behavior. …”
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Metabolome and transcriptome of Fu tea fermented by Aspergillus montevidensis by LI Jianmiao, DING Xiaowei, ZHANG Lixu, MA Xueni

“…The relative content of amino acid generally decreased, while the flavonoids contents significantly increased. …”
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Transcriptomic characterization of temperature stress responses in larval zebrafish. by Yong Long, Linchun Li, Qing Li, Xiaozhen He, Zongbin Cui

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Full-length transcriptomes of 25 grassland plant species by Chongyi Jiang, Zixia Huang, Cynthia Meizoso, Gaby Kumpfmüller, Jochen B. W. Wolf, Holger Schielzeth

“…Despite their ecological and economic value, transcriptomic resources for wild grassland species to support eco-evolutionary and functional genomic studies remain limited. …”
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Advances in spatial transcriptomics and its application in the musculoskeletal system by Haoyu Wang, Peng Cheng, Juan Wang, Hongzhi Lv, Jie Han, Zhiyong Hou, Ren Xu, Wei Chen

“…This review provides a summary of recent advances in spatial transcriptomics and its application to the musculoskeletal system. …”
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Comparative transcriptomics of salinomycin molecular toxicity in chicken and turkey by İlksen Berfin Ekinci, Anna Sławińska, Kacper Żukowski, Małgorzata Olejnik

“…This comparative transcriptomic study aimed to determine molecular toxicity mechanisms of Sal in both species. …”
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Comprehensive resolution and classification of the Epstein Barr virus transcriptome by Truong D. Nguyen, Jia Wang, Meggie T. Lam, Harris McFerrin, Tina M. O’Grady, Claire Roberts, Nicholas Van Otterloo, Trang T. Nguyen, Melody Baddoo, Dorota Wyczechowska, Maria Morales, Yan Dong, Erik K. Flemington

“…Through long-read sequencing, we provide a comprehensive Epstein Barr virus (EBV) transcriptome analysis, identifying 1453 transcript isoforms and resolving the major isoform of all but one lytic reading frame. …”
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Different Species of Bats: Genomics, Transcriptome, and Immune Repertoire by Huifang Wang, Hao Zhou, Xinsheng Yao

“…Integrated genomic, transcriptomic, and immune repertoire analyses reveal that bats employ distinct antiviral strategies, primarily mediated by enhanced immune tolerance and suppressed inflammatory responses. …”
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Transcriptomic insights into Candida albicans adaptation to an anaerobic environment by Karen D. Zeise, John R. Erb-Downward, Gary B. Huffnagle

“…Anaerobic environments can promote antifungal resistance, necessitating a deeper understanding of how C. albicans adapts to anoxia. While much research has been done to identify mechanisms underlying adaptation to hypoxia (i.e., low oxygen), this is the first study evaluating the global transcriptomic response of C. albicans to anoxia (no oxygen). …”
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Dissection of transcriptome and metabolome insights into the polyphyllin biosynthesis in Paris by Ping Xu, Qi Mi, Xiaoye Zhang, Xuan Zhang, Mengwen Yu, Yingsi Gao, Xiheng Wan, Yichun Chen, Qiaoyuan Li, Jia Chen, Guowei Zheng

“…The rhizome of P. polyphylla is rich in polyphyllin I and II, while P. forrestii is abundant in polyphyllin III, and P. fargesii contains high levels of polyphyllin VI, VII and H. …”
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Transcriptome Landscape of Cancer‐Associated Fibroblasts in Human PDAC by Mengyu Tao, Wenting Liu, Jianhua Chen, Rujiao Liu, Jianling Zou, Bo Yu, Chenchen Wang, Mingzhu Huang, Qingjian Chen, Zhe Zhang, Zhiyu Chen, Haoyu Sun, Cheng Zhou, Shuguang Tan, Yuxuan Zheng, Hongxia Wang

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HERV activation segregates ME/CFS from fibromyalgia while defining a novel nosologic entity by Karen Giménez-Orenga, Eva Martín-Martínez, Lubov Nathanson, Elisa Oltra

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Transcriptome analysis of historic olives reveals stress-specific biomarkers by Hamad A. Alkhatatbeh, Monther T. Sadder, Nizar Haddad, Nizar Haddad, Ibrahim Al-Amad, Mohammad Brake, Nawal A. Alsakarneh, Abdulsalam M. Alnajjar

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Tissue-Specific Transcriptomic Responses to Avian Reovirus Inoculation in Ovo by Zubair Khalid, Shahna Fathima, Ruediger Hauck

“…Notably, intestinal responses suggest preemptive immune engagement, while hepatic antiviral mechanisms may play a critical role in restricting viral spread. …”
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