Glucose regulates transcription in yeast through a network of signaling pathways by Shadia Zaman, Soyeon I Lippman, Lisa Schneper, Noam Slonim, James R Broach

“…We found that several well‐studied signaling pathways—such as Snf1 and Rgt—are responsible for specialized but limited responses to glucose. …”
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Rapid changes in transcription profiles of the Plasmodium yoelii yir multigene family in clonal populations: lack of epigenetic memory? by Deirdre Cunningham, Jannik Fonager, William Jarra, Celine Carret, Peter Preiser, Jean Langhorne

“…Thus, regulation of pir gene transcription may be different from that of the well-characterised multigene family, var, of Plasmodium falciparum.…”
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Metabolomic and flux‐balance analysis of age‐related decline of hypoxia tolerance in Drosophila muscle tissue by Laurence Coquin, Jacob D Feala, Andrew D McCulloch, Giovanni Paternostro

“…Abstract The fruitfly Drosophila melanogaster is increasingly used as a model organism for studying acute hypoxia tolerance and for studying aging, but the interactions between these two factors are not well known. Here we show that hypoxia tolerance degrades with age in post‐hypoxic recovery of whole‐body movement, heart rate and ATP content. …”
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Identification of sero-reactive antigens for the early diagnosis of Johne's disease in cattle. by Lingling Li, John P Bannantine, Joseph J Campo, Arlo Randall, Yrjo T Grohn, Robab Katani, Megan Schilling, Jessica Radzio-Basu, Vivek Kapur

“…Since serological detection of MAP infected animals during the early stages of infection remains challenging due to the low sensitivity of extant assays, we screened 180 well-characterized serum samples using a whole proteome microarray from Mycobacterium tuberculosis (MTB), a close relative of MAP. …”
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Combination of triciribine and p38 MAPK inhibitor PD169316 enhances the differentiation effect on myeloid leukemia cells. by Yuri Sato-Nagaoka, Susumu Suzuki, Souma Suzuki, Shinichiro Takahashi

“…Differentiation therapy with all-trans retinoic acid (ATRA) is well established for acute promyelocytic leukemia (APL). …”
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Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes. by Mesfin Tesfaye, Kevin At Silverstein, Sumitha Nallu, Lin Wang, Christopher J Botanga, S Karen Gomez, Liliana M Costa, Maria J Harrison, Deborah A Samac, Jane Glazebrook, Fumiaki Katagiri, Jose F Gutierrez-Marcos, Kathryn A Vandenbosch

“…Plant genomes contain several hundred defensin-like (DEFL) genes that encode short cysteine-rich proteins resembling defensins, which are well known antimicrobial polypeptides. Little is known about the expression patterns or functions of many DEFLs because most were discovered recently and hence are not well represented on standard microarrays. …”
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NUF2 Is a Potential Immunological and Prognostic Marker for Non-Small-Cell Lung Cancer by Xia Li, Lianlian Zhang, Zhongquan Yi, Jing Zhou, Wenchun Song, Panwen Zhao, Jixiang Wu, Jianxiang Song, Qinggan Ni

“…The GSE19804, GSE118370, GSE19188, GSE27262, and GSE33532 microarray datasets were obtained from the Gene Expression Omnibus (GEO) database for the identification of genes involved in NSCLC development as well as progression. …”
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Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults. by Carolin A Kolmeder, Jarkko Salojärvi, Jarmo Ritari, Mark de Been, Jeroen Raes, Gwen Falony, Sara Vieira-Silva, Riina A Kekkonen, Garry L Corthals, Airi Palva, Anne Salonen, Willem M de Vos

“…A detailed taxonomic assignment of peptides and comparison to phylogenetic microarray data made it possible to evaluate the activity of the main phyla as well as key species, including Faecalibacterium prausnitzii. …”
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Acute Changes in Rat Tissue Gene Expression Following Exposure to Flight Relevant Hypobaria by Apurva Borcar, Flaubert Tchantchou, Amol C. Shetty, Anup Mahurkar, Gary Fiskum

“…The cause of this secondary injury is not well understood but it may be related to changes in gene expression induced by exposure to evacuation-relevant conditions. …”
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Synchrotron Radiation-Induced X-Ray Emission to Identify Metal Ions in Preparations of Purified Protein by Thomas Pfister, Huan Feng, Eckard Wimmer, Keith W. Jones

“…Thus, SRIXE may have wide use as a particularly effective method for rapidly determining trace metals in microarray samples.…”
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Recombination and population structure in Salmonella enterica. by Xavier Didelot, Rory Bowden, Teresa Street, Tanya Golubchik, Chris Spencer, Gil McVean, Vartul Sangal, Muna F Anjum, Mark Achtman, Daniel Falush, Peter Donnelly

“…This pattern of recombination is compatible with expectations from the previously described ecological structuring of the enterica population as well as mechanistic barriers to recombination observed in laboratory experiments. …”
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A computational screen for regulators of oxidative phosphorylation implicates SLIRP in mitochondrial RNA homeostasis. by Joshua M Baughman, Roland Nilsson, Vishal M Gohil, Daniel H Arlow, Zareen Gauhar, Vamsi K Mootha

“…While the core protein machinery for OxPhos is well characterized, many of its assembly, maturation, and regulatory factors remain unknown. …”
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Modeling the Drosophila gene cluster regulation network for muscle development. by Alexandre Haye, Jaroslav Albert, Marianne Rooman

“…We focused on data from DNA microarray time series for 20 Drosophila genes involved in muscle development during the embryonic stage. …”
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In silico analyses and global transcriptional profiling reveal novel putative targets for Pea3 transcription factor related to its function in neurons. by Başak Kandemir, Ugur Dag, Burcu Bakir Gungor, İlknur Melis Durasi, Burcu Erdogan, Eray Sahin, Ugur Sezerman, Isil Aksan Kurnaz

“…Present study particularly focuses on the identification of novel neuronal targets of Pea3 in a combinatorial approach, through curation, computational analysis and microarray studies in a neuronal model system, SH-SY5Y neuroblastoma cells. …”
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Comprehensive computational analysis reveals H5N1 influenza virus-encoded miRNAs and host-specific targets associated with antiviral immune responses and protein binding. by Fatima Noor, Muhammad Hamzah Saleem, Muhammad Rizwan Javed, Jen-Tsung Chen, Usman Ali Ashfaq, Mohammad K Okla, Mostafa A Abdel-Maksoud, Yasmeen A Alwasel, Wahidah H Al-Qahtani, Huda Alshaya, Ghulam Yasin, Sidra Aslam

“…Using bioinformatics approaches, several H5N1V produced putative miRNAs as well as the host genes targeted by these miRNAs were found. …”
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Targeted transcriptomic study of the implication of central metabolic pathways in mannosylerythritol lipids biosynthesis in Pseudozyma antarctica T-34. by Keisuke Wada, Hideaki Koike, Tatsuya Fujii, Tomotake Morita

“…In the present study, we used previous gene expression profiles measured by DNA microarray analyses after culturing on two carbon sources, glucose and soybean oil, to further characterize MEL biosynthesis in P. antarctica T-34. …”
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Pattern specification and immune response transcriptional signatures of pericardial and subcutaneous adipose tissue. by Frank H Lau, Rahul C Deo, Gregory Mowrer, Joshua Caplin, Tim Ahfeldt, Adam Kaplan, Leon Ptaszek, Jennifer D Walker, Bruce R Rosengard, Chad A Cowan

“…Using microarray analysis, we found that: 1) pericardial adipose tissue and isolated pericardial adipocytes both overexpress atherosclerosis-promoting chemokines and 2) pericardial and subcutaneous fat depots, as well as isolated pericardial adipocytes and subcutaneous adipocytes, express specific patterns of homeobox genes. …”
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Population structure of Staphylococcus aureus from Trinidad & Tobago. by Stefan Monecke, Bettina Stieber, Rashida Roberts, Patrick Eberechi Akpaka, Peter Slickers, Ralf Ehricht

“…It has been shown previously that high rates of methicillin- and mupirocin-resistant Staphylococcus aureus exist in the Caribbean islands of Trinidad and Tobago, as well as a high prevalence of Panton-Valentine leukocidin-positive S. aureus. …”
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Neighbourhood continuity is not required for correct testis gene expression in Drosophila. by Lisa A Meadows, Yuk Sang Chan, John Roote, Steven Russell

“…We report the targeted disruption of three well-defined male-specific gene expression neighbourhoods in the Drosophila genome by the synthesis of precisely mapped chromosomal inversions. …”
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Genetic and physiological activation of osmosensitive gene expression mimics transcriptional signatures of pathogen infection in C. elegans. by Anne-Katrin Rohlfing, Yana Miteva, Sridhar Hannenhalli, Todd Lamitina

“…Infection of worms with bacterial and fungal pathogens causes the activation of well-characterized innate immune transcriptional programs in pathogen-exposed hypodermal and intestinal tissues. …”
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