Mixed Sequence Reader: A Program for Analyzing DNA Sequences with Heterozygous Base Calling by Chun-Tien Chang, Chi-Neu Tsai, Chuan Yi Tang, Chun-Houh Chen, Jang-Hau Lian, Chi-Yu Hu, Chia-Lung Tsai, Angel Chao, Chyong-Huey Lai, Tzu-Hao Wang, Yun-Shien Lee

“…In this study, we developed a free web-based program, Mixed Sequence Reader (MSR), which can directly analyze heterozygous base-calling fluorescence chromatogram data in .abi file format using comparisons with reference sequences. …”
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CPStools: A package for analyzing chloroplast genome sequences by Lijin Huang, Huanxi Yu, Zhi Wang, Wenbo Xu

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Circular RNAs in endometriosis analyzed through RNA sequencing and bioinformatics for expression profile by Yan Yue, Jing Qian, Dandan Gui, Bin Lu

“…Through high-throughput sequencing, we analyzed the circRNA expression profile in endometriosis patients in comparison to individuals without the condition. …”
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Single-cell sequencing systematically analyzed the mechanism of Emdogain on the restoration of delayed replantation periodontal membrane by Yanyi Liu, Yuhao Peng, Lanhui Chen, Yangfan Xiang, Ximu Zhang, Jinlin Song

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Schistosoma japonicum complex: COI-sequences variations of parasites and their intermediate hosts analyzed using BLAST by M.L. Nelwan

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Next-generation sequencing and bioinformatic approaches to detect and analyze influenza virus in ferrets by Zhen Lin, Amber Farooqui, Guishuang Li, Gane KS Wong, Andrew L Mason, David Banner, Alyson A Kelvin, David J Kelvin, Alberto J Leon

“…Methodology: The RNA from the lungs of ferrets infected with influenza A/California/07/2009 was analyzed by next-generation sequencing (NGS) without using specific PCR amplification of the viral sequences. …”
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A Survey of Computational Tools to Analyze and Interpret Whole Exome Sequencing Data by Jennifer D. Hintzsche, William A. Robinson, Aik Choon Tan

“…Novel computational tools and methods have been developed to analyze and interpret WES data. Here, we review some of the current tools that are being used to analyze WES data. …”
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APPLYING SOME MATCHING ALGORITHMS FOR SEQUENCE IGNATURE TO ANALYZE AND DETECT ENTRIES INTO SYSTEM NETWORKS by Pham Nguyen Huy Phuong, Dang Le Nam

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High-throughput sequencing to analyze changes in the human scalp microbiome during the use of a shampoo by Chong Xu, Wenxi Li, Lin Lin, Dexiang Zhang, Jinyu Lei, Danyang Pan, Shuangcheng Liang, Yiti Chen, Yuepeng Wan, Jingyu He

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Whole-genome sequencing for analyzing the transmission characteristics of drug-resistant Mycobacterium tuberculosis in Ganzhou, China by Juexin Wang, Chan Chen, Huan Fang, Yong Liao, Qiong Lei, De’an Feng, Meng Wang, Baisheng Li

“…Epidemiological investigations were conducted for patients within these transmission clusters to analyze the characteristics of drug-resistant tuberculosis (TB) transmission. …”
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Clinical characteristics of pathogens in children with community-acquired pneumonia were analyzed via targeted next-generation sequencing detection by Junhua Zhao, Mingfeng Xu, Zheng Tian, Yu Wang

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Response of astrocytes and their interaction with surrounding brain cells after acute ischemia-reperfusion analyzed by single-cell transcriptome sequencing by YongHong Wu, Lei Xie, Jing Sun, Qing Wang, WangXiao Xia, Qiang Cai, XiaoYun Lu, XingChun Gou

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Enhancing Welding Geometric Precision: Analyzing the Impact of Weld Path Directions, Sequences and Locating Schemes on Displacement by Roham Sadeghi Tabar, Lars Lindkvist, Kristina Wärmefjord, Pasquale Franciosa, Dariusz Ceglarek, Rikard Söderberg

“…Welding sequences were also found to have a considerable impact, further minimizing distortions when appropriately optimized. …”
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Preparing and Analyzing Expressed Sequence Tags (ESTs) Library for the Mammary Tissue of Local Turkish Kivircik Sheep by Nehir Ozdemir Ozgenturk, Zehra Omeroglu Ulu, Salih Ulu, Cemal Un, Kemal Ozdem Oztabak, Kemal Altunatmaz

“…The aim of this study was to analyze gene expression profiles of both prenatal and postnatal stages for the Kivircik sheep. …”
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Genetic Diversity of <i>Calligonum</i> L. Species Analyzed Using Newly Developed Genomic Simple Sequence Repeats and Their Application to Conservation by Jiayi Su, Xuerong Li, Shiqing Liu, Xiyong Wang, Daoyuan Zhang, Borong Pan, Mengmeng Wei, Jancheng Wang, Wei Shi

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16S rRNA Sequencing and Metabolomics to Analyze Correlation Between Fecal Flora and Metabolites of Squabs and Parent Pigeons by Xiaobin Li, Shengchen Zheng, Haiying Li, Jiajia Liu, Fan Yang, Xiaoyu Zhao, Yafei Liang

“…Fecal samples were collected at 15 days of age, and differences in the microbiota and metabolites between the two groups were analyzed using 16S rRNA sequencing and LC-MS/MS. The results showed the following: (1) Squabs exhibited significantly lower α diversity, with a reduction in their Chao1 index and observed OTUs compared to the parent pigeons. (2) Firmicutes dominated the fecal microbiota in both groups, but parent pigeon feces showed a notably higher abundance of Proteobacteria. …”
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Using New Technologies to Analyze Gut Microbiota and Predict Cancer Risk by Mohammad Amin Hemmati, Marzieh Monemi, Shima Asli, Sina Mohammadi, Behina Foroozanmehr, Dariush Haghmorad, Valentyn Oksenych, Majid Eslami

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Using high-throughput sequencing of 16S rDNA technique to analyze the features of intestinal microbiota in individuals with herpes zoster by DENG Xiaoyue, WANG Weizhen, ZHANG Yingzheng

“…[Objective] To analyze the differences of diversity, structure, and abundance in the intestinal microbiota between patients with herpes zoster (HZ) and healthy individuals using high-throughput sequencing of 16S rDNA, and to determine the relationship between herpes zoster and the intestinal microbiota. …”
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Comparison of Streptococcus pneumoniae isolates occurring in optochin-susceptible and optochin-resistant variants by analyzing whole-genome sequencing data by Sandra Vohrnová, Jana Kozáková, Michal Honskus

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Analyzing pathogenic variants in mismatch repair genes: personalized prevention strategies for lynch syndrome in Chinese families by Xiufang Wang, Haichun Ni, Lin Zhu, Hui Huang, Aiping Deng, Jifa Hu, Wei Cai, Juyi Li

“…Whole-exome sequencing was used to identify pathogenic gene mutations in both families. …”
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