Integrated lncRNA and mRNA analysis reveals the immune modulatory mechanisms of antimicrobial peptide BSN-37 in mouse peritoneal macrophages by Huihui Zhang, Yanhe Lv, Jingjing Li, Bingze Jiao, Jiahui Fu, Xujie Zhao, Likun Cheng, Yilin Bai, Lei Wang, Yanwei Li, Bolin Hang, Xiaobing Wei, Mingcheng Liu, Zhanwei Teng, Meinan Chang, Chengshui Liao, Yueyu Bai, Xiaojing Xia, Ke Ding, Jianhe Hu

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Non-coding RNA-mediated regulation of seed endosperm development by Xinqi Wei, Xinqi Wei, Huanhuan Wang, Kaifeng Zheng, Shengcheng Han, Fanfan Zhang, Fanfan Zhang

“…Recent advances highlight non-coding RNAs (ncRNAs) as central regulators of endosperm development, which integrate epigenetic, transcriptional, and post-transcriptional mechanisms. …”
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Potential mechanisms of non-coding RNA regulation in Alzheimer’s disease by Yue Sun, Xinping Pang, Xudong Huang, Dinglu Liu, Jingyue Huang, Pengtao Zheng, Yanyu Wei, Chaoyang Pang

“…Conversely, the long non-coding RNA BACE1-AS stabilizes BACE1 mRNA, promoting the generation of amyloid-β and accelerating Alzheimer’s disease development. …”
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Characterization of a small non-coding RNA S612 in Bacillus subtilis by Anqi Peng, Weijiao Zhang, Haibo Xiong, Luyao Zhang, Jian Cheng, Yang Wang, Zhen Kang

“…Small regulatory RNAs (sRNAs) are non-coding RNA molecules that fine-tune various cellular processes and respond to various environmental stimuli. …”
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BioDeepfuse: a hybrid deep learning approach with integrated feature extraction techniques for enhanced non-coding RNA classification by Anderson P. Avila Santos, Breno L. S. de Almeida, Robson P. Bonidia, Peter F. Stadler, Polonca Stefanic, Ines Mandic-Mulec, Ulisses Rocha, Danilo S. Sanches, André C.P.L.F. de Carvalho

“…The accurate classification of non-coding RNA (ncRNA) sequences is pivotal for advanced non-coding genome annotation and analysis, a fundamental aspect of genomics that facilitates understanding of ncRNA functions and regulatory mechanisms in various biological processes. …”
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Time-resolved miRNA-mRNA integrated analysis reveals the miRNA-mRNA networks underlying plasma membrane damage-dependent senescence and DNA damage response-dependent senescence in... by Yatzu Chiu, Risa Ishida, Yohsuke Moriyama, Jan Grašič, Keiko Kono

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Long non-coding RNA and mRNA expression profiling of porcine satellite cells using strand-specific RNA-seq by Cencen Li, Xiaofang Cheng, Tianyu Li, Xiujie Xie, Quanxi Li, Feng Chen, Haixia Xu, Pengpeng Zhang, Yongjie Xu

“…Abstract Skeletal muscle satellite cells are integral to muscle development and regeneration. Long non-coding RNAs (lncRNAs), a significant class of non-coding RNAs, participate in numerous biological processes and play critical roles in myogenic differentiation. …”
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Involvement of long non-coding RNA (lncRNA) MALAT1 in shear stress regulated adipocyte differentiation by Justin Caron, Marjan Ghanbariabdolmaleki, Madison Marino, Chong Qiu, Bo Wang, Michael Mak, Shue Wang

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Exosomal non-coding RNAs: key regulators of inflammation-related cardiovascular disorders by Mohamed J. Saadh, Faris Anad Muhammad, Rafid Jihad Albadr, Gaurav Sanghvi, Suhas Ballal, Piyus Kumar Pathak, Lakshay Bareja, Zafar Aminov, Waam Mohammed Taher, Mariem Alwan, Mahmood Jasem Jawad, Ali M. Ali Al-Nuaimi

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Single-Cell Transcriptomic Approaches for Decoding Non-Coding RNA Mechanisms in Colorectal Cancer by Mahnoor Naseer Gondal, Hafiz Muhammad Umer Farooqi

“…This review aims to provide a comprehensive overview of the current state of single-cell bioinformatics in ncRNA CRC research and outline future directions in this rapidly evolving field, emphasizing the integration of computational approaches with experimental validation to advance our understanding of ncRNA biology in CRC.…”
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Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology by Giulia Antonazzo, Pascale Gaudet, Ruth C. Lovering, Helen Attrill

“…Regulatory non-coding RNAs (ncRNAs) are increasingly recognized as integral to the control of biological processes. …”
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The role of non-coding RNA regulates stem cell programmed death in disease therapy by Ziling Liao, Weidong Liu, Lei Wang, Wen Xie, Chaoyan Yao, Qianping Huang, Xingjun Jiang, Caiping Ren

“…And it is governed by a highly complex and sophisticated regulatory network in which non-coding RNAs (ncRNAs) play pivotal roles. ncRNAs refer to RNA molecules that do not encode proteins and encompass various types, including long non-coding RNA (lncRNA), microRNA (miRNA), and circular RNA (circRNA). …”
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Non-coding RNA: A key regulator in the Glutathione-GPX4 pathway of ferroptosis by Sadique Hussain, Gaurav Gupta, Moyad Shahwan, Pooja Bansal, Harpreet Kaur, Mahamedha Deorari, Kumud Pant, Haider Ali, Sachin Kumar Singh, Venkata Sita Rama Raju Allam, Keshav Raj Paudel, Kamal Dua, Vinoth Kumarasamy, Vetriselvan Subramaniyan

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Long non-coding RNA MALAT1: A crucial factor in fibrotic diseases by Linbin Ran, Wei Pan, Jianguo Feng, Liling Tang

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Identification of novel antisense long non-coding RNA APMAP-AS that modulates porcine adipogenic differentiation and inflammatory responses by Lin-zhen ZHANG, Li HE, Ning WANG, Jia-hua AN, Gen ZHANG, Jin CHAI, Yu-jie WU, Chang-jiu DAI, Xiao-han LI, Ting LIAN, Ming-zhou LI, Long JIN

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Integrative analysis of exosomal ncRNAs and their regulatory networks in liver cancer progression by Farzin Mirzaei-nasab, Ahmad Majd, Yousef Seyedena, Nazanin Hosseinkhan, Najma Farahani, Mehrdad Hashemi

“…Methods: This study utilized a comprehensive approach to analyze gene expression patterns and regulatory networks in HCC. We integrated RNA sequencing data gathered from both tissue samples and exosomes. …”
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Explore autophagy-related lncRNA-miRNA-mRNA ceRNA networks for diagnosis of early-onset schizophrenia through transcriptome analysis by Wei Hu, Wei Hu, Xinzhe Du, Xinzhe Du, Xinxia Wang, Xinxia Wang, Kexin Zhang, Kexin Zhang, Junxia Li, Junxia Li, Yao Gao, Yao Gao, Ting An, Hong Zhang, Yu Zhang, Zhiyong Ren, Yong Xu, Yong Xu, Yong Xu, Sha Liu, Sha Liu

“…Current research indicates a potential link between loss of autophagy function and emotional and behavioral abnormalities in individuals with psychiatric disorders.Materials and MethodsThis study aimed to explore diagnostic autophagy-related endogenous competitive RNA (ceRNA) networks for EOS patients. The messenger RNAs (mRNAs) and long non-coding RNAs (lncRNAs) expression profiles were obtained from peripheral blood mononuclear cells of 18 EOS patients and 12 healthy controls (HC). …”
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Non-Coding RNA Extraction from Nucleus Pulposus of Intervertebral Discs with Subsequent Expression Profiling by I. F. Gareev, O. A. Beylerli, G. Yang, D. Zhang

“…With numerous extraction protocols for total RNA and RNA fractions, like microRNA (miRNA) and long non-coding RNA (lncRNA), available for various cell and tissue types, obtaining a high quantitative and qualitative yield from some special material, such as the nucleus pulposus, remains challenging. …”
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Interaction between the liver transcriptome and gut microbiota in mice during Toxoplasma gondii infection as identified by integrated transcriptomic and microbiome analysis by Yang Zou, He Ma, Xing Yang, Xin-Yu Wei, Chao Chen, Jing Jiang, Tao Jiang

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Human Blood-Derived lncRNAs in Autism Spectrum Disorder by Carmela Serpe, Paola De Sanctis, Marina Marini, Silvia Canaider, Provvidenza Maria Abruzzo, Cinzia Zucchini

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