A framework for integrating genomics, microbial traits, and ecosystem biogeochemistry by Zhen Li, William J. Riley, Gianna L. Marschmann, Ulas Karaoz, Ian A. Shirley, Qiong Wu, Nicholas J. Bouskill, Kuang-Yu Chang, Patrick M. Crill, Robert F. Grant, Eric King, Scott R. Saleska, Matthew B. Sullivan, Jinyun Tang, Ruth K. Varner, Ben J. Woodcroft, Kelly C. Wrighton, the EMERGE Biology Integration Institute Coordinators, Eoin L. Brodie

“…This work provides an example of integrating microbial functional trait-based genomics, mechanistic and pragmatic trait parameterizations of diverse microbial metabolisms, and mechanistic ecosystem modeling. …”
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Emerging Technologies and Integrated Strategies for Microbial Detection and Control in Fresh Produce by Ayman Elbehiry, Eman Marzouk, Feras Alzaben, Abdulaziz Almuaither, Banan Abead, Mohammed Alamri, Abdulaziz M. Almuzaini, Akram Abu-Okail

“…By highlighting recent technological advances and their limitations, this review aims to support the development of integrated, effective, and safe microbial control approaches for the fresh produce supply chain.…”
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Integrated analysis of microbiota and gut microbial metabolites in blood for breast cancer by Yu Peng, Jiale Gu, Fubin Liu, Peng Wang, Xixuan Wang, Changyu Si, Jianxiao Gong, Huijun Zhou, Ailing Qin, Fangfang Song

“…This study underscored the pivotal role of microbiota and gut microbial metabolites in blood and their interactions for breast carcinogenesis, as well as the potential of a composite diagnostic panel as a non-invasive biomarker for breast cancer.IMPORTANCEOur integrated analysis demonstrated altered profiles of microbiota and gut microbial metabolites in blood for breast cancer patients. …”
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Integrated analysis of intestinal microbial community and muscle transcriptome profile in rabbits by Shengbo Meng, Shanshan Xing, Huifen Xu, Jing Li, Yixuan Jiang, Hui He, Hanfang Cai, Ming Li

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Integrating microbial communities into algal biotechnology: a pathway to enhanced commercialization by Hari Koneru, Safiatou Bamba, Aksel Bell, Adrian A. Estrada-Graf, Zackary I. Johnson, Zackary I. Johnson

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Concatenating Microbial, Enzymatic, and Organometallic Catalysis for Integrated Conversion of Renewable Carbon Sources by Nina Klos, Ole Osterthun, Hendrik G. Mengers, Patrick Lanzerath, William Graf von Westarp, Guiyeoul Lim, Marcel Gausmann, Jan-Dirk Küsters-Spöring, Jan Wiesenthal, Nils Guntermann, Lars Lauterbach, Andreas Jupke, Walter Leitner, Lars M. Blank, Jürgen Klankermayer, Dörte Rother

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Clonal integration and Bacillus subtilis modulate Glechoma longituba performance and soil microbial communities. by Bing-Nan Zhao, Xiao-Gai Wang, Rui Zhang, Xue-Ge He, Chao Si

“…Many medicinal plants exhibit clonality, but the impact of clonal integration and its interaction with exogenous microbial agents on these plants remains unknown. …”
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Clonal integration and Bacillus subtilis modulate Glechoma longituba performance and soil microbial communities by Bing-Nan Zhao, Xiao-Gai Wang, Rui Zhang, Xue-Ge He, Chao Si

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MicroGlycoDB: A database of microbial glycans using Semantic Web technologies by Sunmyoung Lee, Louis-David Leclercq, Yann Guerardel, Christine M. Szymanski, Thomas Hurtaux, Tamara L. Doering, Takane Katayama, Kiyotaka Fujita, Kazuhiro Aoki, Kiyoko F. Aoki-Kinoshita

“…The data is described using Semantic Web Technologies, which allow microbial glycan data to be represented in a structured format accessible by machines, thus facilitating data sharing and integration with other resources that catalog features such as pathways, diseases, or interactions. …”
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Integrated Rice-Snail-Crayfish Farming System Shapes Soil Microbial Community by Enhancing pH and Microbial Biomass in South Subtropical China by Wenxiang Wu, Xuesong Du, Zhiwei Qin, Qingrong Liu, Fujing Pan

“…In this study, we focused on traditional rice farming (TR), the integrated rice-snail-crayfish (R-S-C) farming system, and mono-rice farming (CK), and systematically examined the impacts of these farming systems on soil chemical properties, microbial biomass, enzyme activity, and microbial community composition. …”
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Effect of Integrated Crop–Livestock Systems on Soil Properties and Microbial Diversity in Soybean Production by Namita Sinha, Brett R. Rushing, Aniruddha Acharya, Shankar Ganapathi Shanmugam

“…Integrated crop and livestock systems (ICLSs) have been considered an important management-based decision to improve soil health by carbon sequestration. …”
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Toward an Integrated Physiological Theory of Microbial Growth: From Subcellular Variables to Population Dynamics by Atul Narang, Sergei S. Pilyugin

“…Finally, we also present open questions andpossible directions for future research that would integrate thesemodels into a global physiological theory of microbial growth.…”
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Enterotype-stratified gut microbial signatures in MASLD and cirrhosis based on integrated microbiome data by Heng Yuan, Heng Yuan, Junyu Zhou, Junyu Zhou, Xuangao Wu, Shiwei Wang, Sunmin Park, Sunmin Park

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Improved maximum growth rate prediction from microbial genomes by integrating phylogenetic information by Liang Xu, Emily Zakem, JL Weissman

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Advancing Dye Degradation: Integrating Microbial Metabolism, Photocatalysis, and Nanotechnology for Eco-Friendly Solutions by Anjuman Ayub, Atif Khurshid Wani, Chirag Chopra, Devinder Kumar Sharma, Owais Amin, Ab Waheed Wani, Anjuvan Singh, Subaya Manzoor, Reena Singh

“…To address this, researchers have explored biological and physicochemical degradation methods, focusing on microbial, photolytic, and nanoparticle-mediated approaches, among others. …”
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A brief review on factors affecting the performance of microbial fuel cell and integration of artificial intelligence by Ritesh Ojha, Jyotilagna Dash, Swati Sucharita Satpathy, Priti Chhanda Ojha, Debabrata Pradhan

“…Abstract Microbial fuel cells (MFCs) represent a promising bioelectrochemical technology that enables simultaneous wastewater treatment and renewable energy generation. …”
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Integrative analysis of gut microbiota and metabolic pathways reveals key microbial and metabolomic alterations in diabetes by Yasser Morsy, Nesma S. Shafie, GP2324 consortium, Marwa Amer

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Integrated physiological, microbial, and metabolomics analyses revealed the differences in different varieties of Paeonia lactiflora Pall by Shuang Wu, Shuang Wu, Beijing Tian, Chenggang Shan, Xin Wang, Xinjing Xie, Hongqing Xie, Xiuwen Jia, Feng Zhang, Jinlong Han, Jinlong Han

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Energy and Exergy Evaluation of an Integrated Dark Fermentation and Microbial Electrolysis System for Sustainable Hydrogen Production by Júlio C. de C. Miranda, Edwin Zondervan

“…This study evaluates hydrogen production from crude glycerol and vinasse using integrated dark fermentation and microbial electrolysis. …”
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A highly efficient heterologous expression platform to facilitate the production of microbial natural products in Streptomyces by Xiuling Wang, Ping Lin, Qiyao Shen, Xueyan Feng, Shouying Xu, Qijun Zhang, Yang Liu, Cailing Ren, Daojing Yong, Qiong Duan, Liujie Huo, Youming Zhang, Gang Li, Jun Fu, Ruijuan Li

“…Two to four copies of the xim BGC were integrated by RMCE, with increasing copy number associated with increasing yield of xiamenmycin. …”
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