Rhizosphere microbial communities of bacteria and fungi responding to cadmium stress in wheat by Yunfeng Xu, Ling Shen, Mingjiong Chen, Haoran Sun, Liangbo Fu, Guoping Zhang, Qiufang Shen

“…A total of 259 CK-specific and 45 Cd-specific operational taxonomic units (OTUs) in bacteria, as well as 3 CK-specific and 2 Cd-specific OTUs in fungi were identified. The function of identified bacteria were enriched in human diseases, organismal systems, metabolism, genetic information processing and environmental information processing. …”
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MicroGlycoDB: A database of microbial glycans using Semantic Web technologies by Sunmyoung Lee, Louis-David Leclercq, Yann Guerardel, Christine M. Szymanski, Thomas Hurtaux, Tamara L. Doering, Takane Katayama, Kiyotaka Fujita, Kazuhiro Aoki, Kiyoko F. Aoki-Kinoshita

“…This semantic data based on ontologies will contribute to the discovery of new knowledge in the field of microbiology, along with the expansion of information on the glycosylation of other microorganisms.…”
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Microbiological hazards associated with the use of water in the post‐harvest handling and processing operations of fresh and frozen fruits, vegetables and herbs (ffFVH). Part 2 – A... by EFSA Panel on Biological Hazards (BIOHAZ), Ana Allende, Avelino Alvarez‐Ordóñez, Valeria Bortolaia, Sara Bover‐Cid, Alessandra De Cesare, Wietske Dohmen, Laurent Guillier, Lieve Herman, Liesbeth Jacxsens, Lapo Mughini‐Gras, Maarten Nauta, Jakob Ottoson, Luisa Peixe, Fernando Perez‐Rodriguez, Panagiotis Skandamis, Elisabetta Suffredini, Jen Banach, Bin Zhou, Maria Teresa daSilva Felício, Laura Martino, Winy Messens, Angela Botteon

“…HOCl is expressed as a function of temperature, pH and total chlorine. The model can simulate ‘what if scenarios’, based on user‐defined process‐specific and product/microorganism‐specific parameters through a web R‐based application. …”
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CHARACTERISTICS OF ROOT CANAL MICROBIOTA IN ACUTE PULPITIS OF TEMPORARY TEETH by O.V. Klitynska, T.I. Zorivchak, R.Y. Krychak

“…Additionally, the biomaterial was sown on a chromogenic medium (bioMerieux, France). Microorganisms were identified by cultural, morphological and biochemical characteristics using API-test systems (bioMerieux). …”
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A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. by Tannistha Nandi, Catherine Ong, Arvind Pratap Singh, Justin Boddey, Timothy Atkins, Mitali Sarkar-Tyson, Angela E Essex-Lopresti, Hui Hoon Chua, Talima Pearson, Jason F Kreisberg, Christina Nilsson, Pramila Ariyaratne, Catherine Ronning, Liliana Losada, Yijun Ruan, Wing-Kin Sung, Donald Woods, Richard W Titball, Ifor Beacham, Ian Peak, Paul Keim, William C Nierman, Patrick Tan

“…Certain environmental microorganisms can cause severe human infections, even in the absence of an obvious requirement for transition through an animal host for replication ("accidental virulence"). …”
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Multi-omics reveals the mechanism of vagus nerve stimulation in the treatment of chronic congestive heart failure by Yuchi Hu, Songyuan Dai, Liling Chen, Xuejuan Ma, Hao Li, Yanan Lu, Chuanxin Li, Xinyun Chen, Hongning Li, Yanzhou Lu, Yimei Huang, Lulu Zhao, Baotong Hua, Ling Zhao

“…Multi-omics analysis identified five key metabolites, four key microorganisms, and sixty key genes. …”
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Isolation and characterization of polyhydroxyalkanoate-producing bacteria from seawater samples (Tumaco) by Pablo Fernández Izquierdo, Guido Ernesto Villota-Calvachi, Iván Otero-Ramírez, Sandra Patricia Hidalgo-Bonilla, Maira Alejandra Quiroz Cabrera, Jenny Dimelza Gomez Arrieta, Edith Mariela Burbano Rosero

“…The aim of this work was to isolate and characterize molecularly and biochemically PHA-producing bacteria of water samples obtained from five sites (gas stations) in coastal regions of Tumaco Island, Nariño-Colombia, and determinate the antimicrobial susceptibility of isolates because the biological role goes beyond their storage function, since they presence in cytoplasm enhances stress resistance of microorganisms. …”
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HiBC: a publicly available collection of bacterial strains isolated from the human gut by Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Johanna Bosch, Selina Nüchtern, Nicole S. Treichel, Marko Baloh, Soheila Razavi, Afrizal Afrizal, Ntana Kousetzi, Andrea M. Aguirre, David Wylensek, Amy C. Coates, Susan A. V. Jennings, Atscharah Panyot, Alina Viehof, Matthias A. Schmitz, Maximilian Stuhrmann, Evelyn C. Deis, Kevin Bisdorf, Maria D. Chiotelli, Artur Lissin, Isabel Schober, Julius Witte, Thorsten Cramer, Thomas Riedel, Marie Wende, Katrin A. Winter, Lena Amend, Alessandra Riva, Stefanie Trinh, Laura Mitchell, Jonathan Hartman, David Berry, Jochen Seitz, Lukas C. Bossert, Marianne Grognot, Thorsten Allers, Till Strowig, Michael Pester, Birte Abt, Lorenz C. Reimer, Jörg Overmann, Thomas Clavel

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Biofloc technology significantly reshapes water microbiome and improves survival rates in Japanese eel (Anguilla japonica) by Jiho Yang, Hyunjun Choi, Jun Seong Park, Yehyeon Cha, Ju-Ae Hwang, Seung-Yoon Oh

“…In summary, our analysis identified microbial residents potentially associated with the higher growth rates observed in BFT-treated eels, highlighting the need for further functional studies.IMPORTANCEThis study is significant as it addresses a critical gap in the application of Biofloc Technology (BFT) to Japanese eel (Anguilla japonica) aquaculture, a high-value species in East Asia. …”
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Isolation and Characterization of Zinc Resistant Diazotrophic Bacteria from Assiut Governorate Soils by Ahmed Salah, Naemia M. Yousef, Abd El-Latif Hesham, Ingy M. El-Hefny, Asmaa M.M. Mawad

“…Microorganisms exhibit a complex relationship with heavy metals. …”
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Analysis of structures and expression patterns of the flavin-containing monooxygenase family genes in Bursaphelenchus xylophilus by HAO Xin, TAN Ruina, CHEN Jie, LI Yang, CAO Jingxin, DIAO Jian, DENG Zhen, ZHANG Ping, MA Ling

“…Flavin-containing monooxygenases (FMOs) participate in endogenous and exogenous metabolisms in organisms, and exist widely in plants, animals and microorganisms. To explore the function of Bursaphelenchus xylophilus FMOs (BxFMOs) in the host colonization and in response to the nematicide stress, we firstly screened and identified 13 Bxfmos from the genome of B. xylophilus by means of bioinformatics, and then analyzed the physicochemical properties, evolutionary development, protein structures, and gene expression patterns of these genes. …”
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Using a combination of biomarkers to monitor allograft dysfunction in lung transplant recipients by Zein Kattih, Shambhu Aryal

“…Biomarkers like anti-HLA antibodies including donor-specific antibodies (DSA), donor-derived cell-free DNA (dd-cfDNA), immune cell function (ICF) assays and next-generation sequencing for microorganisms allow for early identification of allograft dysfunction as well as differentiate rejection from other processes such as infection. …”
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Antimicrobial activity of Origanum vulgare L. essential oil and its effects on fungal gene expression. by Yan Li, Lu He, Zhiwei Xue, Yu Liang, Jiaying Jiang, Yiyan Wei, Huisi Li, Huimin He, Rongjun Li

“…GO analysis indicated that these DEGs were primarily associated with glutathione metabolic processes, cytosolic ribosome function, and ubiquitin-like protein peptidase activity. …”
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Activity-Based Screening of Soil Samples from Nyingchi, Tibet, for Amylase-Producing Bacteria and Other Multifunctional Enzyme Capacities by J. H. Liu, J. N. Guo, H. Lu, J. Lin

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Exploring protein N-glycosylation in ammonia-oxidizing Nitrososphaerota archaea through glycoproteomic analysis by Satoshi Nakagawa, Hirokazu Yagi, Tomoki Suyama, Shigeru Shimamura, Saeko Yanaka, Maho Yagi-Utsumi, Shingo Kato, Moriya Ohkuma, Koichi Kato, Ken Takai

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Gut microbiome in ADHD and its relation to neural reward anticipation. by Esther Aarts, Thomas H A Ederveen, Jilly Naaijen, Marcel P Zwiers, Jos Boekhorst, Harro M Timmerman, Sanne P Smeekens, Mihai G Netea, Jan K Buitelaar, Barbara Franke, Sacha A F T van Hijum, Alejandro Arias Vasquez

“…<h4>Background</h4>Microorganisms in the human intestine (i.e. the gut microbiome) have an increasingly recognized impact on human health, including brain functioning. …”
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A MALDI-ToF mass spectrometry database for identification and classification of highly pathogenic bacteria by Peter Lasch, Wolfgang Beyer, Alejandra Bosch, Rainer Borriss, Michal Drevinek, Susann Dupke, Monika Ehling-Schulz, Xuewen Gao, Roland Grunow, Daniela Jacob, Silke R. Klee, Armand Paauw, Jörg Rau, Andy Schneider, Holger C. Scholz, Maren Stämmler, Le Thi Thanh Tam, Herbert Tomaso, Guido Werner, Joerg Doellinger

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Alterations in the Salivary Microbiome and Metabolism in Patients With Carotid Atherosclerosis from Rural Northeast China by Yahong Wu, Liying Xing, Lijie Lu, Shuang Liu, Dan Zhao, Li Lin, Songlin Wang, Chen Li, Yaping Pan

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The impact of host development and density stress on the diversity of microbial communities in the gut and its surrounding environment of the Chinese alligator by Chong Wang, Changcheng Li, Peng Liu, Song Zhang, Yongkang Zhou, Xuesong Zhang, Yingchao Wang, Ruoya Liu, Xiaobing Wu, Haitao Nie

“…PICRUst2 predicts more abundant metabolic pathways related to gut function during high‐density stress, possibly linked to Roseburia. …”
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The pattern of soil microbe metabolic limitation and carbon use efficiency was altered by light grazing in typical steppe by Yiyang Zhao, Li Liu, Yong Ding, Lizhu Guo, Jing Guo

“…Previous studies have investigated the impact of different levels of grazing intensity on the metabolic behavior and carbon utilization efficiency of soil microorganisms. This research aimed to evaluate the microbial biomass levels, physicochemical properties, and the functions of four specific extracellular enzymes associated with the uptake of C, N, and P in a sample plot that exemplifies a typical steppe ecosystem. …”
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