Multi-omics analysis of excessive nitrogen fertilizer application: Assessing environmental damage and solutions in potato farming by Qiaorong Wei, Yanbin Yin, Qingsong Tong, Zhenping Gong, Ying Shi

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16S rDNA sequencing combined with metabolomic probes to investigate the effects of Salmonella Pullorum on gut microbes and metabolites in broilers by Jiongwen Wu, Jiongwen Wu, Jiongwen Wu, Ruixiang Xue, Ruixiang Xue, Ruixiang Xue, Zhexia Fan, Zhexia Fan, Zhexia Fan, Ruina Li, Ruina Li, Ruina Li, Xiaomeng Wang, Xiaomeng Wang, Xiaomeng Wang, Chutian Ye, Chutian Ye, Chutian Ye, Shuya Chen, Shuya Chen, Shuya Chen, Cheng Fang, Cheng Fang, Cheng Fang, Xiquan Zhang, Xiquan Zhang, Xiquan Zhang, Qingbin Luo, Qingbin Luo, Qingbin Luo

“…These findings highlight the significant alterations in gut microbial composition and metabolic functions due to SP infection. The differential metabolites and bacterial taxa identified in this study may provide insights into the underlying mechanisms of PD pathogenesis and potential biomarkers for disease management.…”
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Induced Mutagenesis and Comparative Genomics of <i>Raoultella</i> sp. 64 for Enhanced Antimony Resistance and Biosorption by Tianhua Huang, Shiran Cao, Xiaohan Li, Chuhan Wang, Xiawei Peng

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Metagenomic Analyses of Water Samples of Two Urban Freshwaters in Berlin, Germany, Reveal New Highly Diverse Invertebrate Viruses by Roland Zell, Marco Groth, Lukas Selinka, Hans-Christoph Selinka

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Intercropping-driven effects on soil organic carbon mineralization and its temperature sensitivity are associated with soil C-N-P stoichiometry and carbon-acquiring microorganisms... by Ziyu Yang, Jinmeng Hu, Xiaowei Chen, Yuping Zhang, Yizhe Wang, Jianwei Peng, Jiangchi Fei, Gongwen Luo, Chaolin Liao

“…The carbon–nitrogen-phosphorus (C-N-P) stoichiometry of soil and microbiome, C-acquiring enzyme activities, and the abundances of 15 functional genes relating to SOC mineralization were employed to identify their relationships with SOC mineralization rate and its Q10. …”
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Microbial communities of urban soils in the Norilsk agglomeration by Maria V. Korneykova, Natalia V. Saltan, Ekaterina V. Kozlova, Maria N. Vasileva, Polina D. Davydova, Egor D. Berezhnoi

“…An increase in the number of coliform bacteria, enterobacteria and opportunistic microfungi has been noted, which is generally characteristic of urban ecosystems and is not critical. The identified patterns suggest that urban green infrastructure can form niches for the microorganisms that can effectively perform ecological functions despite stressful conditions. …”
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Plant–Soil Microbial Interaction: Differential Adaptations of Beneficial vs. Pathogenic Bacterial and Fungal Communities to Climate-Induced Drought by Nataliya Loiko, M. Nazrul Islam

“…Climate change and the increasing frequency and severity of drought events pose significant challenges for sustainable agriculture worldwide. Soil microorganisms, both beneficial and pathogenic, play a crucial role in mediating plant–environment interactions and shaping the overall functioning of agroecosystems. …”
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Metagenomics Insights into the Role of Microbial Communities in Mycotoxin Accumulation During Maize Ripening and Storage by Xuheng Nie, Xuefeng Chen, Xianli Lu, Shuiyan Yang, Xin Wang, Fuying Liu, Jin Yang, Ying Guo, Huirong Shi, Hui Xu, Xiang Zhang, Maoliang Fang, Yin Tao, Chao Liu

“…The metagenomic profiling identified 85 phyla, 1219 classes, 277 orders, 590 families, 1171 genera, and 2130 species of microorganisms, including six mycotoxigenic fungal species. …”
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The Patterns and Environmental Factors of Diversity, Co-Occurrence Networks, and Assembly Processes of Protistan Communities in Bulk Soils of Forests by Bing Yang, Lin Wu, Zhisong Yang, Zhihe Zhang, Wanju Feng, Weichao Zheng, Chi Xu

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Identifying rhizosphere bacteria and potential mechanisms linked to compost suppressiveness towards Fusarium oxysporum by Hildah Amutuhaire, Adi Faigenboim-Doron, Judith Kraut-Cohen, Jonathan Friedman, Eddie Cytryn

“…These taxa contained a myriad of non-ribosomal peptides and polyketides synthetases biosynthetic gene clusters (BGCs) with putative antimicrobial and iron-chelating functions. We successfully isolated two Streptomyces strains from FORC-suppressing compost amended rhizospheres that were almost identical to the Streptomyces bin2 (99% ortho ANI) metagenome assembled genome identified in the shotgun metagenome analysis. …”
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Macrogenomic Analysis Reveals Soil Microbial Diversity in Different Regions of the Antarctic Peninsula by Jiangyong Qu, Xiaofei Lu, Tianyi Liu, Ying Qu, Zhikai Xing, Shuang Wang, Siluo Jing, Li Zheng, Lijun Wang, Xumin Wang

“…(1) Background: The unique geographical and climatic conditions of the Antarctic Peninsula contribute to distinct regional ecosystems. Microorganisms are crucial for sustaining the local ecological equilibrium. …”
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Ophiocordyceps zhenxingensis sp. nov. and its microbiota during sexual and asexual stages in nature by Huiling Tian, Gangxiang Fei, Jingqiang Guan, Zhongshun Xu, Jiaojiao Qu, Yongdong Dai, Xiao Zou

“…The symbiotic microorganisms associated with the fungus play a crucial role in its growth and development. …”
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Molecular Epidemiology of <i>Salmonella enterica</i> Serotype Dublin Isolated from 2011 to 2022 from Veal and Dairy Cattle in Pennsylvania by Manoj K. Sekhwal, Lingling Li, Traci Pierre, Tammy Matthews, Erin Luley, Deepanker Tewari, Suresh V. Kuchipudi, Bhushan Jayarao, Maurice Byukusenge

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Expression of CD14⁺CD282⁺, CD14⁺CD284⁺, CD14⁺HLA-DR⁺, CD14⁺CD11b⁺ receptors and sIgA level i... by G. N. Chistyakova, I. I. Remizova, A. V. Ustyuzhanin, A. A. Makhanyok, P. A. Kadochnikova, D. A. Abakarova

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Changes in the Composition and Properties of Cultured Bacterial Strains of Ginseng Rhizosphere According to Soil Characteristics in the Forest and Plots by Tatiana Y. Gorpenchenko, Marina L. Sidorenko, Alexandra V. Kim, Yuliya V. Vologzhanina, Darya A. Rusakova, Yana O. Timofeeva, Polina A. Perepelkina, Vitalii M. Kazarin, Yuriy N. Zhuravlev

“…The most common phylum of cultured microorganisms was <i>Bacillota</i>, while the main differences were observed in the functional group of potassium-solubilizing bacteria belonging to the phyla <i>Pseudomonadota</i>.…”
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Soil Microbial Community Characteristics and Influencing Factors in Alpine Marsh Wetlands with Different Degradation Levels in Qilian Mountain National Park, Qinghai, China by Jintao Zhang, Xufeng Mao, Hongyan Yu, Xin Jin, Lele Zhang, Kai Du, Yanxiang Jin, Yongxiao Yang, Xianying Wang

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Antimicrobial Peptides: A Promising Solution to the Rising Threat of Antibiotic Resistance by Tarequl Islam, Noshin Tabassum Tamanna, Md Shahjalal Sagor, Randa Mohammed Zaki, Muhammad Fazle Rabbee, Maximilian Lackner

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Microbial Contamination in Commercial Honey: Insights for Food Safety and Quality Control by Felipe Bruxel, Ana Maria Geller, Andrei Giacchetto Felice, Jeferson Aloísio Ströher, Anderson Santos de Freitas, Angela Balen, Maria Beatriz Prior Pinto Oliveira, Wemerson de Castro Oliveira

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In anaerobic reactors the microbial community structure depends on feed type, with no “keystone” species tied to COD removal by Olutooni B. Ajayi, William A. Arnold, Natasha Wright, Jeremy S. Guest, Paige J. Novak

“…To support successful deployment, however, the encapsulated community must contain all the needed microorganisms for successful treatment and be flexible enough to treat a variety of wastewaters. …”
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Comparative Genomics of Two Novel Bacillus Strains: Microbiomic Insights into the Sequences, Metabolomics, and Potential Safe Use in the Creation of Biopreparations by Valentina A. Filippova, Georgi Yu. Laptev, Larisa A. Ilina, Elena A. Yildirim, Ekaterina S. Ponomareva, Evgeni A. Brazhnik, Natalia I. Novikova, Daria G. Tiurina, Andrei V. Dubrovin, Alisa S. Dubrovina, Kseniya A. Sokolova, Irina A. Klyuchnikova, Vasiliy A. Zaikin, Darren K. Griffin, Michael N. Romanov

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