Named entity recognition for bacterial Type IV secretion systems. by Sophia Ananiadou, Dan Sullivan, William Black, Gina-Anne Levow, Joseph J Gillespie, Chunhong Mao, Sampo Pyysalo, Balakrishna Kolluru, Junichi Tsujii, Bruno Sobral

“…Classifying research publications based on biological processes, cellular components, molecular functions, and microorganism species should improve the precision and recall of literature searches allowing researchers to keep up with the exponentially growing literature, through resources such as the Pathosystems Resource Integration Center (PATRIC, patricbrc.org). …”
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Design of TiO₂-Based Hybrid Systems with Multifunctional Properties by Simona Ortelli, Maurizio Vespignani, Ilaria Zanoni, Magda Blosi, Claudia Vineis, Andreana Piancastelli, Giovanni Baldi, Valentina Dami, Stefania Albonetti, Anna Luisa Costa

“…We discovered a clear breaking point between TiO₂ and SS single-component trends and identified different ranges of applicability by considering different functional properties such as photocatalytic, heavy metal sorption capacity, and antibacterial properties. …”
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Proteomic signatures of human oral epithelial cells in HIV-infected subjects. by Elizabeth Yohannes, Santosh K Ghosh, Bin Jiang, Thomas S McCormick, Aaron Weinberg, Edward Hill, Faddy Faddoul, Mark R Chance

“…Overall, HAART therapy provides an incomplete immune recovery of the oral epithelial cells of the oral cavity for HIV-infected subjects, and the toxic side effects of HAART and/or HIV chronicity silence expression of multiple proteins that in healthy subjects function to provide robust innate immune responses and combat cellular stress.…”
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Skin microbiota during metamorphosis of Quasipaa spinosa: guidance for maintaining mucosal symbiotic microbial flora homeostasis in early life of frogs by Jinliang Hou, Yu Tan, Yanfei Huang, Hong Li, Deliang Li, Xinhua Liu, Junhua Li, Yazhou Hu, Jianguo Xiang

“…LEfSe (Linear discriminant analysis effect size) showed significant enrichment of beneficial bacteria at various developmental stages, including Bacteroides, Bacillus, and Lactobacillus. Functional prediction analysis shows significant differences in skin microorganism functions across various developmental stages, with a primary focus on metabolic functions. …”
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Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota by Mara D. Maeke, Xiuran Yin, Lea C. Wunder, Chiara Vanni, Tim Richter-Heitmann, Samuel Miravet-Verde, Hans-Joachim Ruscheweyh, Shinichi Sunagawa, Jenny Fabian, Judith Piontek, Michael W. Friedrich, Christiane Hassenrück

“…Besides, members of this group exhibit the highest proportion of unknown genes within the entire phylum Thermoplasmatota, suggesting a high degree of functional novelty in this class. Conclusions In this study, we emphasize the necessity of targeted, data-integrative approaches to deepen our understanding of the rare biosphere and uncover the functions and metabolic potential hidden within these understudied taxa. …”
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Assessing the Biodegradation of Low-Density Polyethylene Films by <i>Candida tropicalis</i> SLNEA04 and <i>Rhodotorula mucilaginosa</i> SLNEA05 by Randa Harrat, Ghania Bourzama, Gaëtan Burgaud, Emmanuel Coton, Aymen Bourezgui, Boudjema Soumati

“…SEM analysis revealed morphological alterations, including cracks and holes, ATR-FTIR detected new functional groups (alcohols, alkynes, aldehydes, alkenes and ketones), while XRD identified changes in the polymer crystallinity and phase composition. …”
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Analysis of Human Gut Microbiota Enzymes for Biotechnological and Food Industrial Applications by Alfonso Torres-Sánchez, Gracia Luque, Pilar Ortiz, Alicia Ruiz-Rodríguez, Ana López-Moreno, Margarita Aguilera

“…The human gut microbiota is a complex and dynamic ecosystem, recognized for its valuable and wide array of physiological functions. This study investigated the human gut microbiota as a source of enzymes for innovative applications in the biomedicine, bioremediation, and food and feed biotechnological industries by integrating data from combined in silico and in vitro approaches. …”
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Beyond Efficiency: The Social and Ecological Costs of Plant Factories in Urban Farming—A Review by László Csambalik, Izóra Gál, Krisztina Madaras, Andrea Tóbiás, Péter Pusztai

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Gut Barrier, Microbial Metabolites, and Immune Homeostasis in Autoimmune Hepatitis: From Molecular Mechanisms to Strategies by Xintong Zhang, Linyan Wan, Yujiao Zheng, Yaowei Ai

“…These interactions, coupled with immune cell modifications, contribute to AIH progression. Our review identifies promising treatment strategies, including the use of probiotic supplementation, engineered prebiotic compounds, microbiota transfer procedures, and specific medications targeting gut microorganisms and their byproducts. …”
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Breaking the Recycling Bottleneck of Thermosets via Bio‐Tailoring Technology by Jinping Yu, Huan Wang, Yang Xu, Boutrous Wemegah, Yang Lan, Jing Li, Li Yang, Guanjun Chang

“…The indole groups in the cross‐linked network can be accurately identified and tailored by microorganisms, giving rise to the cross‐linked network being tailored into new linear polymers and small molecule segments, named the Bio‐Tailoring technology. …”
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The role of hydroxyindoles in protecting neuronal cultures from ferroptosis by Md. Jakaria, Jason R. Cannon

“…Our findings indicate that hydroxyindoles function as a class of ferroptosis inhibitors in cell cultures. …”
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Listeria Cerebritis with Tumor Necrosis Factor Inhibition by Eileen Reilly, Justin Hwang

“…By day 6, gross neurologic function deteriorated prompting transfer to higher level of care where the patient spiked a fever and one set of blood cultures revealed Gram-positive bacillus. …”
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Immune status of patients with acne and concomitant skin malasseziosis by E. Yu. Koretskaya

“…Study of leukocyte count, leukocyte phenotyping and the study of phagocytes function were carried out. Furthermore, levels of IgA, IgG, IgM and concentration of IL-10 and IL-12 were studied in the peripheral blood. …”
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Free-caged rearing modes regulate chicken intestinal metabolism by influencing gut microbial homeostasis by Tao Li, Peng Wang, Zhuo Zhi, Tong Guo, Jie Zhou, Huiya Zhang, Chang Cao, Yingjie Cai, Yuxiao Li, Jianqin Zhang

“…Linear discriminant analysis Effect Size (LefSe) highlighted five key microorganisms, Gemmiger formicilis, Bacteria unclassified, Bacteroides sp. …”
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Selective recruitment of beneficial microbes in the rhizosphere of maize affected by microbial inoculants, farming practice, and seasonal variations by Ioannis D. Kampouris, Theresa Kuhl-Nagel, Jan Helge Behr, Loreen Sommermann, Doreen Babin, Davide Francioli, Rita Zrenner, Susanne Kublik, Michael Schloter, Uwe Ludewig, Kornelia Smalla, Günter Neumann, Rita Grosch, Joerg Geistlinger

“…Conclusions Overall, we show that the growing season determined the effect of BMc inoculation on maize plants by shaping microbiome composition and function in the maize rhizosphere more than farming practice. …”
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Whole-genome sequencing uncovers the plant growth-promoting potential of Bacillus licheniformis G41, isolated from the rhizosphere soil of Gannan navel orange by Haojie Cao, Tao Peng, Wenyuan Zhao, Huimin Huang, Shuijing Yu, Yichun Zhu

“…By comparing the predicted genes with the KEGG database, key functional genes related to IAA biosynthesis, siderophore biosynthesis and transport, and phosphorus cycle were identified. …”
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Optimization of thermosonication conditions for critical quality parameters of watermelon juice using response surface methodology by Makaepea M. Maoto, Daniso Beswa, Afam I. O. Jideani

“…According to the findings, thermosonication could be a viable method for preserving watermelon juice, with minimal quality loss and improved functional attributes.…”
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Unlocking the potential of Chlorella sp. biomass: an effective adsorbent for heavy metals removal from wastewater by Ntombiphumile Perceverence Tenza, Stefan Schmidt, Precious Nokwethemba Mahlambi

“…The biomass composition revealed carbon, nitrogen, oxygen, phosphorus, and sulfur, with slightly higher nitrogen and sulfur levels than reported. Functional groups such as hydroxyl, carboxyl, carbonyl, amide, and ether were identified by FTIR. …”
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Cell-Free DNA in Emergency Medical Care by A. D. Filev, V. M. Pisarev

“…The purpose of this review is to identify the prospects for the introduction of cfDNA in clinical medicine and the severities arose along this way. …”
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Machine learning-derived diagnostic model of epithelial ovarian cancer based on gut microbiome signatures by Cheng Chen, Chengyuan Deng, Yanwen Li, Shuguang He, Yunhong Liu, Shuwen Pan, Wenqian Xu, Lu Fang, Yixi Zhu, Yingying Wang, Xiaoxin Jiang

“…A significant correlation was identified between the Cally index and microorganisms. …”
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