Meeting Report on the Symposium “Evolutionary Applications” at the 3rd Joint Congress on Evolutionary Biology by Hildegard Uecker

“…ABSTRACT The symposium “Evolutionary Applications” took place on June 28, 2024 in the virtual part of the 3rd Joint Congress on Evolutionary Biology. …”
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Protein 3D structure computed from evolutionary sequence variation. by Debora S Marks, Lucy J Colwell, Robert Sheridan, Thomas A Hopf, Andrea Pagnani, Riccardo Zecchina, Chris Sander

“…The evolutionary trajectory of a protein through sequence space is constrained by its function. …”
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Dual activity of PNGM-1 pinpoints the evolutionary origin of subclass B3 metallo-β-lactamases: a molecular and evolutionary study by Jung Hun Lee, Masayuki Takahashi, Jeong Ho Jeon, Lin-Woo Kang, Mineaki Seki, Kwang Seung Park, Myoung-Ki Hong, Yoon Sik Park, Tae Yeong Kim, Asad Mustafa Karim, Jung-Hyun Lee, Masayuki Nashimoto, Sang Hee Lee

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From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors. by Ana Zafra Ruano, Elisa Cilia, José R Couceiro, Javier Ruiz Sanz, Joost Schymkowitz, Frederic Rousseau, Irene Luque, Tom Lenaerts

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Narrow [O iii] Emission Lines as a Potential Proxy for the Evolutionary Stage of Quasars by Zhi-fu Chen, Zhe-Geng Chen, Xing-long Peng, Wei-rong Huang

“…This relationship suggests that the core component of the [O III ] λ 5007 emission line could potentially serve as a surrogate for the evolutionary stage of a quasar. …”
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Protocol for 3D photogrammetry and morphological digitization of complex skulls by Naomi De Leo, Claudio Chimenti, Luigi Maiorano, Davide Tamagnini

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Paraphrase the Obstacles to the Recycling of Construction and Demolition Waste: A Perspective of the Evolutionary Game of Three Stakeholders by Zhangli Chen, Keying Li, Haowen Tan, Jiawen Liu, Xizhen Wu, Peng Wang

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Evolutionary and epidemic dynamics of COVID-19 in Germany exemplified by three Bayesian phylodynamic case studies by Sanni Översti, Ariane Weber, Viktor Baran, Bärbel Kieninger, Alexander Dilthey, Torsten Houwaart, Andreas Walker, Wulf Schneider-Brachert, Denise Kühnert

“…Bayesian phylodynamic inference, integrating epidemiology and evolutionary biology, has become an essential tool in genomic epidemiological surveillance. …”
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A study on collaborative governance of excessive medical care based on three-way evolutionary game and simulation by Hanxiang Gong, Hanxiang Gong, Tao Zhang, Xi Wang, Baoling Wu, Shufang Zhao

“…Parameter sensitivity within the three-party gaming system is also investigated through simulation analysis.ResultsThe findings indicate that when patients trust treatment outcomes and healthcare institutions are more inclined to provide appropriate care, government regulatory departments tend to adopt a more relaxed regulatory strategy. …”
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Research on Legitimacy Building and Governance of Transportation Service Platform Ecosystem Based on Three-Party Evolutionary Game by Qiaohong Pan, Wenping Luo, Zongyuan Liu, Mengmeng Luan

“…Based on the transportation service platform ecosystem, this study establishes a three-party evolutionary game model considering strategies of government, platforms, and suppliers, and analyzes the corresponding governance mechanisms. …”
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Evolutionary variation of the monkeypox virus detected for the first time in Nantong, Jiangsu by Xingpei Ji, Ruyue Liang, Chao Bao, Xiuli Cai, Shiyao Chen, Lu Chen, Li Li, Xiaolei Ji

“…Whole-genome sequencing of samples from seven confirmed patients identified a new lineage, C.1.1, which may be related to imported cases from Japan. Evolutionary analysis of MPXV showed fewer mutations mediated by Apolipoprotein B mRNA Editing Catalytic polypeptide-like 3 (APOBEC3). …”
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3D spatial evolutionary particle swarm algorithm based emergency communication spatial deployment optimization by Yumin Chen, Xicheng Tan, Jinguang Jiang, Xiaoliang Meng, Zeenat Khadim Hussain, Jianguang Tu, Huaming Wang, You Wan, Zongyao Sha

“…This paper proposes an ANET nodes spatial optimization deployment algorithm based on 3D Spatial Evolutionary Particle Swarm Optimization (3DSEPSO). …”
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Evolutionary and functional analyses reveal a role for the RHIM in tuning RIPK3 activity across vertebrates by Elizabeth J Fay, Kolya Isterabadi, Charles M Rezanka, Jessica Le, Matthew D Daugherty

“…Here, we perform comparative evolutionary analyses of RIPK1–5 and associated proteins in vertebrates to identify lineage-specific rapid evolution of RIPK3 and RIPK1 and recurrent loss of RIPK3-associated proteins. …”
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Eco-Evolutionary Drivers of Vibrio parahaemolyticus Sequence Type 3 Expansion: Retrospective Machine Learning Approach by Amy Marie Campbell, Chris Hauton, Ronny van Aerle, Jaime Martinez-Urtaza

“…ObjectiveThe unique, rapid, global expansion of a clonal complex of Vibrio parahaemolyticus (a marine bacterium causing gastroenteritis infections) named Vibrio parahaemolyticus sequence type 3 (VpST3) provides an opportunity to explore the eco-evolutionary drivers of pathogen expansion. …”
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Analysis of Digital Security Governance under the Objectives of Digital Ecology: A Three-Party Evolutionary Game Approach by Zhen Tian, Chuchu Jiang, Gangyi Yue

“…Together with third-party platforms, they are analyzed as participants in an evolutionary game. The study examines the evolutionary stability of strategy choices made by each party and explores the relationship between key factors such as negative externalities, data security incident probabilities, and their impacts on strategy selection using numerical simulations. …”
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Structural And Evolutionary Analysis of Zika Virus NS5 Protein by N Sujetha, K Rohini, N Mohan, Prabhu Puniethaa

“…An integrated approach to bioinformatics examines its evolutionary, dynamic, and structural features. Multiple sequence alignment and evolutionary trees are necessary for protein function. …”
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Differing evolutionary histories of the ACTN3*R577X polymorphism among the major human geographic groups. by Carlos Eduardo G Amorim, Victor Acuña-Alonzo, Francisco M Salzano, Maria Cátira Bortolini, Tábita Hünemeier

“…It has been proposed that the functional ACTN3*R577X polymorphism might have evolved due to selection in Eurasian human populations. …”
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Comparative Genomic Analysis of COMT Family Genes in Three <i>Vitis</i> Species Reveals Evolutionary Relationships and Functional Divergence by Yashi Liu, Zhiyuan Bian, Shan Jiang, Xiao Wang, Lin Jiao, Yun Shao, Chengmei Ma, Mingyu Chu

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A complex interplay of genetic introgression and local adaptation during the evolutionary history of three closely related spruce species by Shuo Feng, Haixia Ma, Yu Yin, Wei Wan, Kangshan Mao, Dafu Ru

“…However, despite growing recognition of its importance, the extent to which adaptive introgression has shaped the evolutionary history of closely related species remains poorly understood. …”
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Evolutionary　Computation:an　Overview by He Zhenya Wei Chengjian (Department of Radio Engineering, Southeast University, Nanjing 210018)

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