Bayesian tip-dated timeline for diversification and major biogeographic events in Muroidea (Rodentia), the largest mammalian radiation by Raquel López-Antoñanzas, Tiago R. Simões, Fabien L. Condamine, Moritz Dirnberger, Pablo Peláez-Campomanes

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Exome analysis reveals species divergence in TYR and identifies species genetic markers in five endemic Macaca species on Sulawesi Island by Xiaochan Yan, Nami Arakawa, Kanthi Arum Widayati, Laurentia Henrieta Permita Sari Purba, Fahri Fahri, Bambang Suryobroto, Yohey Terai, Hiroo Imai

“…Abstract Background One of the greatest challenges for evolutionary biologists is explaining the vast diversity observed in nature. …”
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A refined analysis of Neanderthal-introgressed sequences in modern humans with a complete reference genome by Shen-Ao Liang, Tianxin Ren, Jiayu Zhang, Jiahui He, Xuankai Wang, Xinrui Jiang, Yuan He, Rajiv C. McCoy, Qiaomei Fu, Joshua M. Akey, Yafei Mao, Lu Chen

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Characterization of Ganoderma pseudoferreum mitogenome revealed a remarkable evolution in genome size and composition of protein-coding genes by Jinpeng Lu, Jinpeng Lu, Chunxiu Qin, Chunxiu Qin, Siyan Huo, Siyan Huo, Huanwei Wang, Huanwei Wang, Justice Norvienyeku, Justice Norvienyeku, Weiguo Miao, Weiguo Miao, Wenbo Liu, Wenbo Liu

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Bis-Iridoid Glycosides and Triterpenoids from <i>Kolkwitzia amabilis</i> and Their Potential as Inhibitors of ACC1 and ACL by Jiang Wan, Ze-Yu Zhao, Can Wang, Chun-Xiao Jiang, Ying-Peng Tong, Yi Zang, Yeun-Mun Choo, Jia Li, Jin-Feng Hu

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Adaptive component crossover for differential evolution in solving single-objective optimization problems by Sopov Anton, Sopov Evgenii

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Genome-wide microsatellite characterization and their marker development and transferability in Broussonetia Species by Xiaowen Jia, Hanyu Li, Ying Han, Lu Wang, Chanjuan Lai, Xi Liu, Pan Li, Zupei Lei, Yonghua Zhang

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Red Blood Cell Transcriptome Reflects Physiological Responses to Alternative Nutrient Sources in Gilthead Seabream (<i>Sparus aurata</i>) by Rafael Angelakopoulos, Andreas Tsipourlianos, Alexia E. Fytsili, Leonidas Papaharisis, Arkadios Dimitroglou, Dimitrios Barkas, Zissis Mamuris, Themistoklis Giannoulis, Katerina A. Moutou

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Advances in analyzing and engineering plant metabolic diversity by Kira J. Tiedge, Federico Roda, Stacey D. Smith, Gaurav D. Moghe

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Comparative analysis of mitochondrial genomes of Stemona tuberosa lour. reveals heterogeneity in structure, synteny, intercellular gene transfer, and RNA editing by De Xu, Tao Wang, Juan Huang, Qiang Wang, Zhide Wang, Zhou Xie, Dequan Zeng, Xue Liu, Liang Fu

“…Additionally, we conducted a phylogenetic analysis involving S. tuberosa and 17 other taxa to clarify its evolutionary and taxonomic status. This study provides a crucial genetic resource for evolutionary research within the genus Stemona and other related genera in the Stemonaceae family. …”
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Efficiently Hiding Sensitive Itemsets with Transaction Deletion Based on Genetic Algorithms by Chun-Wei Lin, Binbin Zhang, Kuo-Tung Yang, Tzung-Pei Hong

“…It solves the limitations of the evolutionary process by adopting both the compact GA-based (cGA) mechanism and the prelarge concept. …”
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An effective feature selection approach based on hybrid Grey Wolf Optimizer and Genetic Algorithm for hyperspectral image by Yiqun Shang, Minrui Zheng, Jiayang Li, Xinqi Zheng

“…The innovation of GWOGA lies in three core strategies: (1) chaotic map and Opposition-Based Learning (OBL) for uniformly distributed population initialization, enhancing diversity and mitigating premature convergence; (2) elite learning strategy to prioritize high-ranking solutions, strengthening the search hierarchy and efficiency; and (3) a hybrid optimization mechanism where GWO ensures rapid early-stage convergence, while GA refines global search in later stages to escape local optima. …”
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Phylogenetic Analysis of the North American Beetle Genus Trichiotinus (Coleoptera: Scarabaeidae: Trichiinae) by T. Keith Philips, Mark Callahan, Jesús Orozco, Naomi Rowland

“…A hypothesized evolutionary history of the North American endemic trichiine scarab genus Trichiotinus is presented including all eight species and three outgroup taxa. …”
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Differential Evolution with Novel Mutation and Adaptive Crossover Strategies for Solving Large Scale Global Optimization Problems by Ali Wagdy Mohamed, Abdulaziz S. Almazyad

“…The proposed algorithm, namely, ANDE, introduces a new triangular mutation rule based on the convex combination vector of the triplet defined by the three randomly chosen vectors and the difference vectors between the best, better, and the worst individuals among the three randomly selected vectors. …”
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The effects of attention to climate change on carbon, fossil energy and clean energy markets: Based on causal network learning algorithms by Wenwen Liu, Miaomiao Tang, Peng Zhao

“…This study uses the Peter-Clark Momentary Conditional Independence (PCMCI) method in causal network learning algorithms to systematically quantify the multidimensional dynamic causal effects of climate attention, yield, and volatility across these three markets. We construct an investor climate attention indicator using 47 climate-related keywords and analyze daily price data from seven carbon, four clean energy, and three fossil energy markets. …”
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Morpho-phonological levels and grammaticalization in Karimojong: A review of the evidence by Diane Lesley- Lesley-Neuman

“…Some Karimojong affixes exhibit behaviors characteristic of two different levels, depending on context; these affixes are proposed to be in transition between levels. The three levels are proposed to result from diachronic evolution, and their relative chronological development can be established by (1) correspondences to landmarks within the cross-linguistically attested agreement system grammaticalization cline, which groups affixes according to ordering universals, and (2) the existence of successive evolutionary cycles of frequentive morphology. …”
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OPTIMIZATION OF TOPOLOGICAL STRUCTURES OF CENTRALIZED LOGISTICS NETWORKS IN THE PROCESS OF REENGINEERING by Vladimir Beskorovainyi, Antonii Sudik

“…The article solves the following tasks: analysis of the current state of the problem of system optimization of logistics networks and methods of its solution; formalization of the problem of system optimization of logistics networks as territorially distributed objects; development of a mathematical model of the problem of optimization of centralized three-level topological structures of logistics networks at the stage of reengineering; development of a method for solving the problem of optimization of centralized three-level topological structures of logistics networks at the reengineering stage; estimation of time complexity of the method of optimization of centralized three-level topological structures of logistics networks. …”
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Complex Dynamic Analysis for Game Model under Different Regulatory Levels in China’s Housing Rental Market by Lingling Mu, Xiangyu Qin, Yuan Li, Ping Liu

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The genome sequence of the Atlantic cod, Gadus morhua (Linnaeus, 1758) [version 2; peer review: 1 approved, 2 approved with reservations] by Sissel Jentoft, Ave Tooming-Klunderud, Ole K. Tørresen, Spyridon Kollias, Morten Skage, Kjetill S. Jakobsen

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The meaning of death: evolution and ecology of apoptosis in protozoan parasites. by Sarah E Reece, Laura C Pollitt, Nick Colegrave, Andy Gardner

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