UFO: A tool for unifying biomedical ontology-based semantic similarity calculation, enrichment analysis and visualization. by Duc-Hau Le

“…Important applications of those data include estimating the functional similarity between ontology terms and between annotated biomedical entities, analyzing enrichment for a set of biomedical entities. …”
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Neural Dynamics during Resting State: A Functional Magnetic Resonance Imaging Exploration with Reduction and Visualization by Wei Li, Miao Wang, Wen Wen, Yue Huang, Xi Chen, Wenliang Fan, The Alzheimer's Disease Neuroimaging Initiative

“…In this study, we explored the potential patterns in resting state fMRI data at four frequency bands (slow 2–slow 5) on two cohorts, one of which consisted of young and elderly adults and the other of patients with Alzheimer’s disease and normal controls (NC). …”
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Visualization of internal defects using a deep generative neural network model and ultrasonic nondestructive testing by Р. V. Vasiliev, А. V. Senichev, I. Giorgio

“…At the output, an image that visualizes the internal defect is generated.Results. …”
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BrainAR: Automated Brain Tumor Diagnosis With Deep Learning and 3D Augmented Reality Visualization by Meriem Khedir, Kahina Amara, Nassima Dif, Oussama Kerdjidj, Shadi Atalla, Naeem Ramzan

“…In this paper, we present BrainAR, an innovative mobile AR-based application designed for the automatic segmentation, 3D visualization, localization, and interaction with brain tumors using multiparametric 3D Magnetic Resonance Imaging (MRI) data. …”
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Research trend of functional magnetic resonance imaging in diabetes mellitus research: a visualization and bibliometric analysis by Zongbo Sun, Yuanyuan Li, Xueli Qu, Luguang Wang, Shengyin Zhu, Xuejing Sun, Li Yang, Xiaonan Sun

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Bibliometric and visualization analysis of hydrogel research in spinal cord injury: comparative study of Chinese and English literature by Wenju Bai, Xiaoyuan Huang, Jian Liu, Kamiran Halike, Jinyong Li, Xv Zhang, Tengwu Chang, Jichao Wang

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A large, general and modular DARPin–apoferritin scaffold enables the visualization of small proteins by cryo-EM by Xin Lu, Ming Yan, Yang Cai, Xi Song, Huan Chen, Mengtan Du, Zhenyi Wang, Jia'an Li, Liwen Niu, Fuxing Zeng, Quan Hao, Hongmin Zhang

“…The modular design of our scaffold allows the adaptation of new DARPins through minor amino-acid-sequence modifications, enabling the binding and visualization of a diverse array of proteins. The high symmetry and near-spherical shape of the scaffold not only mitigates the prevalent challenge of preferred particle orientation in cryo-EM but also significantly reduces the demands of image collection and data processing. …”
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A deep learning based ultrasound diagnostic tool driven by 3D visualization of thyroid nodules by Yahan Zhou, Chen Chen, Jincao Yao, Jiabin Yu, Bojian Feng, Lin Sui, Yuqi Yan, Xiayi Chen, Yuanzhen Liu, Xiao Zhang, Hui Wang, Qianmeng Pan, Weijie Zou, Qi Zhang, Lu Lin, Chenke Xu, Shengxing Yuan, Qingquan He, Xiaofan Ding, Ping Liang, Vicky Yang Wang, Dong Xu

“…Abstract Recognizing the limitations of computer-assisted tools for thyroid nodule diagnosis using static ultrasound images, this study developed a diagnostic tool utilizing dynamic ultrasound video, namely Thyroid Nodules Visualization (TNVis), by leveraging a two-stage deep learning framework that involved three-dimensional (3D) visualization. …”
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Monitoring semantic relatedness and revealing fairness and biases through trend tests by Jean-Rémi Bourguet, Adama Sow

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mbX: An R Package for Streamlined Microbiome Analysis by Utsav Lamichhane, Jeferson Lourenco

“…It automates key post-sequencing steps, including taxonomic data cleaning and visualization, addressing the need for reproducible and user-friendly microbiome workflows. mbX’s core functions, ezclean and ezviz, take raw taxonomic output (such as those from QIIME 2) and sample metadata to produce a cleaned relative abundance dataset and high-quality stacked bar plots with minimal manual intervention. …”
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Electroencephalography and analysis of functional brain activity by S. A. Gulyaev

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Portrait of literary works by Riau Authors using a knowledge graph by Tiara Yusrianda, Nining Sudiar, Winda Monika, Arbi Haza Nasution

“…Data Collection Methods. This research adopts a Research and Development (R&D) approach involving five stages: needs analysis, design, development, testing, and evaluation. …”
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Global research on dental polymers and their application: A bibliometric analysis and knowledge mapping by Saqib Ali, Beenish Fatima Alam, Shafiq Ur Rehman, Shakil Ahmad, Kefi Iqbal, Imran Farooq

“…Further evaluation and visualization of the selected data were performed with the help of various tools, including MS Excel, Microsoft Word, Google open refine, Biblioshiny, BibExcel, and VOS viewer. …”
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Simultaneous determination of the amylose and amylopectin content of foxtail millet flour by hyperspectral imaging by Guoliang Wang, Min Liu, Hongtao Xue, Erhu Guo, Aiying Zhang

“…Partial least squares regression (PLSR) was then used to establish the prediction model and regression equation, which was used to visualize the two components. Results demonstrated that the key band extraction combined algorithm effectively reduced data dimension without compromising the accuracy of the prediction model. …”
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Knowledge Mapping and Global Research Trends of Ginseng Polysaccharides: a Bibliometric Analysis with Visualizations from 1985 to 2023 by Mo P, Gao B, Wang R, Huang S, Chen Q, Li M, Wu J, Zhang S, Chen J

“…However, there was still a lack of comprehensive and integrated analysis of ginseng polysaccharides.Methods: This study employed the Web of Science Core Collection (WoSCC) as the data source and utilized software tools including Bibliometrix R Package, VOSviewer, and CiteSpace for the purpose of conducting data visualization and analysis of ginseng polysaccharides publications.Results: China emerged as the foremost and most impactful nation in the realm of ginseng polysaccharide research, fostering robust collaborative ties with Republic of Korea and the USA. …”
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Research on indoor and outdoor joint positioning technology based on WiFi signal by Tang Jie, Huang Ming, Lin Jianxi, Cheng Cheng, Yang Jingjing

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Analysis of trends and hotspots in the research on sleep disorders of maintenance hemodialysis patients based on bibliometrics by Li Huang, Siyu Li, Jing Zeng

“…Bibliometric analysis and VOSviewer software were employed to visualize data on countries, institutions, journals, authors, and keywords.ResultsA total of 337 articles were included. …”
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An Institutional Theory Framework for Leveraging Large Language Models for Policy Analysis and Intervention Design by J. de Curtò, I. de Zarzà, Leandro Sebastián Fervier, Victoria Sanagustín-Fons, Carlos T. Calafate

Subjects: “…data-driven policy analysis…”
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Forecasting sea level rise using enhanced deep learning models by M. Sami Zitouni, Leena Elneel, Naseeb Assad Albakri, Mohammed Q. Alkhatib, Hussain Al-Ahmad

“…An interactive web platform was developed to visualize forecasted inundation areas and support decision-making. …”
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Experimental Acoustic Flow Analysis Inside a Section of an Acoustic Waveguide by Stefan WEYNA, Witold MICKIEWICZ, Michał PYŁA, Michał JABŁOŃSKI

“…The paper presents experimental data and visualization of flow in the vicinity of an abrupt change in cross-section of a circular duct and on obstacles inside where the acoustic wave generates nonlinear separated flow and vortex fields. …”
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