Genome assembly has a major impact on gene content: a comparison of annotation in two Bos taurus assemblies. by Liliana Florea, Alexander Souvorov, Theodore S Kalbfleisch, Steven L Salzberg

“…For instance, although the later assembly is generally superior, 660 protein coding genes in the earlier assembly are entirely missing from the later genome's annotation, and approximately 3,600 (15%) of the genes have complex structural differences between the two assemblies. …”
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BharatSim: An agent-based modelling framework for India. by Philip Cherian, Jayanta Kshirsagar, Bhavesh Neekhra, Gaurav Deshkar, Harshal Hayatnagarkar, Kshitij Kapoor, Chandrakant Kaski, Ganesh Kathar, Swapnil Khandekar, Saurabh Mookherjee, Praveen Ninawe, Riz Fernando Noronha, Pranjal Ranka, Vaibhhav Sinha, Tina Vinod, Chhaya Yadav, Debayan Gupta, Gautam I Menon

“…Its computational core, coded in Scala, supports simulations of a large number of individual agents, up to 50 million. …”
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The Role of PIWI‐Interacting RNA in Urologic Carcinoma and Its Clinical Implications by Jiajia Cai, Shirui Jiang, Dongdong Lu, Ghulam Murtaza, Mingbang Wang, Yuqing Li, Da Shi, Yingrui Li, Hu Fang, Song Wu

“…ABSTRACT Piwi‐interacting RNA (piRNA) represents a class of small non‐coding RNA molecules, typically ranging in length from 18 to 35 nucleotides. …”
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Defining the Parameters for Sorting of RNA Cargo Into Extracellular Vesicles by Ahmed Abdelgawad, Yiyao Huang, Olesia Gololobova, Yanbao Yu, Kenneth W. Witwer, Vijay Parashar, Mona Batish

“…RNA cargo of EVs, including coding and non‐coding RNAs, can change the behaviour of recipient cells, affecting processes including gene expression, proliferation, and Fapoptosis. …”
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Cross-kingdom regulation of plant microRNAs: potential application in crop improvement and human disease therapeutics by Lei Shi, Lei Shi, Chao Guo, Miaomiao Fang, Yingmei Yang, Fei Yin, Yuan Shen, Yuan Shen

“…Plant microRNAs (miRNAs) are small non-coding RNA molecules that usually negatively regulate gene expression at the post-transcriptional level. …”
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EFFICIENT RIBOSOMAL RNA DEPLETION FROM DROSOPHILA TOTAL RNA FOR NEXT-GENERATION SEQUENCING APPLICATIONS [version 2; peer review: 2 approved] by Baskar Bakthavachalu, Awadhesh Pandit, Omkar Koppaka, Ankita Chodankar, Shweta Tandon

“…Additionally, our method successfully enriched the non-coding transcriptome, making it a valuable tool for studying ncRNA in Drosophila. …”
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The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) by Nguyen Nhat Nam, Nguyen Ngoc Trai, Nguyen Phuong Thuy, Le Quoc Duy, Pham Nguyen Tuong Van, Tan Tai Nguyen, Hoang Dang Khoa Do

“…There were 79 protein‐coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. …”
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miRNA mediated mitochondrial function and gene regulation associated with Alzheimer’s disease by Kumudu Subasinghe, Robert Barber, Robert Barber, Robert Barber, Nicole Phillips, Nicole Phillips

“…MicroRNAs (miRNAs) are small non-coding RNA molecules that are known to regulate gene expression in their target locations thereby contributing to epigenetic mechanisms associated with disease pathologies. …”
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The complete chloroplast genome of Barringtonia asiatica (L.) Kurz (Lecythidaceae) by Emmanuel Bonifacio S. Timog, Renerio P. Gentallan, Kristine Joyce O. Quiñones, Michael Cedric B. Bartolome, Daryl B. Ceribo

“…The cp genome contained 35 tRNA genes, eight rRNA genes, and 86 protein-coding genes with an overall GC content of 36.8%. …”
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Role of Single Nucleotide Polymorphisms in BRCA1 and BRCA2 Genes Relative to Previous Studies in Pakistan in the Prognosis of Breast Cancer by Saba Munir, Yasir Nawaz, Fouzia Tanvir, Maria Akram, Muhammad Luqman, Javaria Zafar, Muhammad Zaman

“…Single nucleotide polymorphisms are particularly relevant due to small allelic variations. BRCA1 and BRCA2 genes are notably associated with inherited breast and ovarian cancers. …”
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Human lineage mutations regulate RNA-protein binding of conserved genes NTRK2 and ITPR1 involved in human evolution by Min Zhao, Weichen Song, Shunying Yu, Wenxiang Cai, Guan Ning Lin

“…These genes also carried excess damaging coding mutations that caused neurodevelopmental disorders, ataxia and schizophrenia. …”
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Chloroplast Genome of Myristica fragrans: Assembly, Annotation, and Phylogenetic Relationships by Hani Sitti Nuroniah, Aditya Nugroho, Fitri Indriani, Eliya Suita, Bakhtiar Basyah, Susanna Susanna, Ujang Wawan Darmawan, Neo Endra Lelana

“…Genome annotation identified 126 genes, including 83 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. …”
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Molecular characterisation and expression analysis of an interferon-induced protein with tetratricopeptide repeats 1 (IFIT1) homologue from Asian seabass (Lates calcarifer) by Krishnapriya Raji Sathyan, Avinash Premraj, Sajeevan Thavarool Puthiyedathu

“…The complete ORF of LcIFIT1 encodes a 441 amino acid protein with nine tetratricopeptide repeat (TPR) domains. The protein-coding region of the LcIFIT1 gene was encoded by two exons separated by a small 157 bp intron. …”
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Molecular logic for cellular specializations that initiate the auditory parallel processing pathways by Junzhan Jing, Ming Hu, Tenzin Ngodup, Qianqian Ma, Shu-Ning Natalie Lau, M. Cecilia Ljungberg, Matthew J. McGinley, Laurence O. Trussell, Xiaolong Jiang

“…Abstract The cochlear nuclear complex (CN), the starting point for all central auditory processing, encompasses a suite of neuronal cell types highly specialized for neural coding of acoustic signals. However, the molecular logic governing these specializations remains unknown. …”
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EXPRESSION PROFILE OF MICRORNAS IN SQUAMOUS CELL HEAD AND NECK CARCINOMA by Yu. A. Veryaskina, G. V. Kakurina, E. S. Zhuravlev, S. E. Titov, I. V. Kondakova, O. V. Cheremisina, D. A. Shishkin, I. F. Zhimulev, E. L. Choynzonov, N. N. Kolesnikov

“…MicroRNAs (miRNAs) are a recently discovered class of small non-coding RNAs. Based on literature and our data, we have chosen 12 miRNAs (miRNA-21, -221, -222, -155, -205, -20a, -125b, -146b, -181b, -200a, -126, -451), involved in HNSCC carcinogenesis. …”
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The complete chloroplast genome and phylogenetic analysis of Cyananthus macrocalyx Franch. 1887 Campanulaceae by Hai-Tao Ma, Dan Lei, Qi-Yin Chen, Bei Jiang, Yong-Zeng Zhang

“…A total of 112 genes were annotated from C. macrocalyx, including 78 protein-coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. …”
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MicroRNAs in lung cancer: their role in tumor progression, biomarkers, diagnostic, prognostic, and therapeutic relevance by Madhura Chatterjee, Sayoni Nag, Saurabh Gupta, Tanmoy Mukherjee, Prem Shankar, Deepak Parashar, Arindam Maitra, Kaushik Das

“…Abstract MicroRNAs (miRNAs) are a class of small non-coding RNAs which are associated with post-transcriptional regulation of gene expression. …”
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Differential Expression of Maternal Plasma microRNAs and Their Respective Gene Targets Can Predict Early Fetal Growth Restriction by Emmanuel Kolawole, Aparna Duggirala, Oscar Gronow, Agnieszka Wisniewska, Jiamiao Hu, Bee Kang Tan

“…This systematic review examined the role of microRNAs (miRNAs) in the pathogenesis of FGR, focusing on their potential as non-invasive biomarkers. MicroRNAs are small, non-coding RNAs that regulate gene expression. …”
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Consistent Posttest Calculations for LOCA Scenarios in LOBI Integral Facility by F. Reventós, P. Pla, C. Matteoli, G. Nacci, M. Cherubini, A. Del Nevo, F. D'Auria

“…Integral test facilities (ITFs) are one of the main tools for the validation of best estimate thermalhydraulic system codes. The experimental data are also of great value when compared to the experiment-scaled conditions in a full NPP. …”
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Translating Exosomal microRNAs from Bench to Bedside in Parkinson’s Disease by Oscar Arias-Carrión, María Paulina Reyes-Mata, Joaquín Zúñiga, Daniel Ortuño-Sahagún

“…Recent evidence suggests that exosomal microRNAs (miRNAs)—small, non-coding RNAs encapsulated in extracellular vesicles—are key regulators of PD pathophysiology and promising candidates for biomarker development and therapeutic intervention. …”
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