Effect of Heterologous Expression of Key Enzymes Involved in Astaxanthin and Lipid Synthesis on Lipid and Carotenoid Production in <i>Aurantiochytrium</i> sp. by Yaping Shao, Zhengquan Gao, Fengjie Sun, Yulin Cui, Xinyu Zou, Jinju Ma, Qiaolei Wang, Hao Zhang, Yuyong Wu, Chunxiao Meng

“…This study provides strong experimental evidence to support the application of increasing carotenoid levels in <i>Aurantiochytrium</i> sp.…”
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Plant growth promoting fungus Cladosporium ‘BF-F’ promotes cadmium accumulation in Sesuvium portulacastrum by regulating plant metal ion transport by Wenbin Zhang, Yanyu Cao, Mengnan Ma, Ziling Li, Xiuli Jiang, Dan Wang, Dingding Cao, Christopher Rensing, Hong Liu, Xiangying Wei

“…To gain potential mechanisms underlying the ‘BF-F’-mediated Cd accumulation, colonized plants along with control plants were further investigated via transcriptomic analysis. Data indicated that the expression of genes related to zinc and copper uptake and transport were significantly higher in Cd-stressed plants inoculated with ‘BF-F’. …”
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Synthetic microbial consortium enhances acetoin production and functional quality of citrus vinegar via metabolic and process optimization by Yerui OuYang, Yerui OuYang, Shaoqing Zou, Shaoqing Zou, Panpan Liu, Panpan Liu, Linfeng Xie, Linfeng Xie, Yiwen Xiao, Yiwen Xiao, Ya Wang, Ya Wang, Guangjie Wu, Guangjie Wu, Jiantao Liu, Jiantao Liu, Jiantao Liu, Bin Liu, Bin Liu, Boliang Gao, Boliang Gao, Du Zhu, Du Zhu, Du Zhu, Du Zhu

“…These compounds contribute to both product stability and potential health benefits. This study provides a practical and scalable strategy for enhancing acetoin biosynthesis and improving the quality of functional fruit vinegar through rational design of microbial consortia and process engineering.…”
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Identification of the bHLH Transcription Factor Family in Orah Mandarin and the Response of <i>CrbHLH46</i> to Low-Temperature Stress by Chaoying Chen, Xulin Li, Ke Wen, Tuo Yin, Ping Tian, Ke Zhao, Li Zhang, Xianyan Zhou, Xiaozhen Liu, Hanyao Zhang

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Environmental adaptation and reproductive mechanisms of Codium fragile subsp. fragile in the Bohai Bay by Jingjing Zi, Zhiying Wang, Lanping Ding

“…By integrating physiological and transcriptomic data, this study provides new insights into the environmental adaptation strategies of Codium fragile subsp. fragile, supporting its artificial cultivation and commercial applications.…”
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Explaining <i>Echis</i>: Proteotranscriptomic Profiling of <i>Echis carinatus carinatus</i> Venom by Salil Javed, Prasad Gopalkrishna Gond, Arpan Samanta, Ajinkya Unawane, Muralidhar Nayak Mudavath, Anurag Jaglan, Kartik Sunagar

“…For instance, the venom gland transcriptome and inter- and intra-population venom variation in <i>E. c. carinatus</i> have largely remained uninvestigated. …”
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Comprehensive analysis of lncRNAs and mRNAs revealed potential participants in the process of avian reovirus infection by Shaqiu Zhang, Shaqiu Zhang, Shaqiu Zhang, Shaqiu Zhang, Jinkang Li, Mingshu Wang, Mingshu Wang, Mingshu Wang, Mingshu Wang, Renyong Jia, Renyong Jia, Renyong Jia, Renyong Jia, Shun Chen, Shun Chen, Shun Chen, Shun Chen, Mafeng Liu, Mafeng Liu, Mafeng Liu, Mafeng Liu, Dekang Zhu, Dekang Zhu, Dekang Zhu, Dekang Zhu, Xinxin Zhao, Xinxin Zhao, Xinxin Zhao, Xinxin Zhao, Ying Wu, Ying Wu, Ying Wu, Ying Wu, Qiao Yang, Qiao Yang, Qiao Yang, Qiao Yang, Juan Huang, Juan Huang, Juan Huang, Juan Huang, Xumin Ou, Xumin Ou, Xumin Ou, Xumin Ou, Di Sun, Di Sun, Di Sun, Di Sun, Bin Tian, Bin Tian, Bin Tian, Bin Tian, Yu He, Yu He, Yu He, Yu He, Zhen Wu, Zhen Wu, Zhen Wu, Zhen Wu, Anchun Cheng, Anchun Cheng, Anchun Cheng, Anchun Cheng

“…We employed qRT-PCR to validate the sequencing results, confirming their accuracy. The transcriptome data indicated significant upregulation of the PARP9, TLR7, TRIM33, and ATG5 genes, suggesting their potential involvement in ARV infection. …”
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The role of the mitochondrial dynamic distribution in oocyte development arrest induced by F-53B by Chu Chu, Kun Zhao, Yuan-Yuan Fan, Marjut Roponen, Pasi Jalava, Mo Yang, Yong-Qi Luo, Li-Zi Lin, Yun-Ting Zhang, Jun-Heng Ma, Shu-Li Xu, Wen-Wen Bao, Wei-Hong Tan, Lin-Tao Xue, Guang-Hui Dong, Xiao-Miao Zhao

“…Phenotypic assessments included oocyte maturation status, spindle architecture, and mitochondrial function, and single-cell transcriptomic analysis was conducted to investigate molecular mechanism. …”
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The carotenoid biosynthesis pathway revealed to respond to Na2SiO3 stress on cotton growth by Ruize Song, Xiao Chen, Yunxin He, Xuke Lu, Hao Lan, Yapeng Fan, Hui Huang, Yuping Sun, Menghao Zhang, Lidong Wang, Fange Wu, Xinrui Zhang, Xin Yu, Jie Jiang, Shuai Wang, Xiugui Chen, Junjuan Wang, Lixue Guo, Lanjie Zhao, Ling Li, Ying Li, Qin Chen, Wuwei Ye

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Characterization of Immune Response Against <i>Mycobacterium marinum</i> Infection in Coho Salmon (<i>Oncorhynchus kisutch</i>) by Le Li, Danlei Xu, Xiaoqing Yu, Chunlei Gai, Haibin Ye, Jing Diao

“…This study investigated the immune response of Coho salmon to <i>M. marinum</i> infection and the bacterial proliferation dynamics in the liver and kidney. Transcriptome analysis revealed 5028 differentially expressed genes (DEGs) in the kidney and 3419 DEGs in the liver at 6 weeks post-infection. …”
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Discovery of polymethoxylated flavonoids in Artemisia argyi as main active components in inhibiting rice blast fungus by Jia Zhou, Yunhan Wang, Qiaohuan Chen, Jinxin Li, Rong Xu, Bei Wang, Dahui Liu, Yuhuan Miao

“…Here, we used bioactivity-guided isolation method and transcriptomics to clarify the antifungal active compounds in A. argyi and their antifungal mechanisms. …”
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Regulatory mechanism of Haa1p and Hap4p in Saccharomyces cerevisiae to mixed acetic acid and formic acid when fermenting mixed glucose and xylose by Xin-Yu Xiao, Bo Li, Zi-Yuan Xia, Quan Zhang, Cai-Yun Xie, Yue-Qin Tang

“…Conclusions This study provides the experimental evidence for the protective role of Haa1p and Hap4p under combined acetic and formic acid stress. …”
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AozC, a zn(II)2Cys6 transcription factor, negatively regulates salt tolerance in Aspergillus oryzae by controlling fatty acid biosynthesis by Wenbin Yu, Zeying Zhao, Yufei Zhang, Yayi Tu, Bin He

“…Conclusion This research suggest that AozC acts as a negative regulator in salt tolerance and modulates fatty acid biosynthesis in response to osmotic stress. These results provide insights into the regulatory mechanisms of stress adaptation in A. oryzae.…”
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Identification of key transcription factors, including DAL80 and CRZ1, involved in heat and ethanol tolerance in Saccharomyces cerevisiae by Rong-Rong Chen, Li Wang, Xue-Xue Ji, Cai-Yun Xie, Yue-Qin Tang

“…Conclusions This study provides valuable theoretical insights and identifies critical TF targets, contributing to the development of robust S. cerevisiae strains for improved bioethanol production.…”
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Global and single-nucleotide resolution detection of 7-methylguanosine in RNA by Silvia D’Ambrosi, Raquel García-Vílchez, Darek Kedra, Patrice Vitali, Nuria Macias-Cámara, Laura Bárcena, Monika Gonzalez-Lopez, Ana M. Aransay, Sabine Dietmann, Antonio Hurtado, Sandra Blanco

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Dysregulation of innate and adaptive lymphoid immunity may have implications for symptom attribution and predict responses to targeted therapies in neuropsychiatric systemic lupus... by Julius Lindblom, Guillermo Barturen, Lorenzo Beretta, Daniel Toro-Domínguez, Elena Carnero-Montoro, Maria Orietta Borghi, Jessica Castillo, Ellen Iacobaeus, Yvonne Enman, Chandra Mohan, Marta E. Alarcón-Riquelme, Dionysis Nikolopoulos, Ioannis Parodis, Jacques-Olivier Pers, Alain Saraux, Valérie Devauchelle-Pensec, Sandrine Jousse-Joulin, Bernard Lauwerys, Julie Ducreux, Anne-Lise Maudoux, Ana Tavares, Isabel Almeida, Miguel Angel Gonzalez-Gay Mantecón, Ricardo Blanco Alonso, Alfonso Corrales Martínez, Ignasi Rodríguez-Pintó, Gerard Espinosa, Rik Lories, Nicolas Hunzelmann, Doreen Belz, Niklas Baerlecken, Michael Zauner, Michaela Lehner, Eduardo Collantes, Ma Angeles Aguirre-Zamorano, Alejandro Escudero-Contreras, Ma Carmen Castro-Villegas, Norberto Ortego, María Concepción Fernández Roldán, Enrique Raya, Inmaculada Jiménez Moleón, Enrique de Ramon, Isabel Díaz Quintero, Pier Luigi Meroni, Tommaso Schioppo, Carolina Artusi, Carlo Chizzolini, Aleksandra Zuber, Donatienne Wynar, Attila Balog, Magdolna Deák, Márta Bocskai, Sonja Dulic, Gabriella Kádár, Falk Hiepe, Silvia Thiel, Manuel Rodriguez Maresca, Antonio López-Berrio, Rocío Aguilar-Quesada, Héctor Navarro-Linares

“…Objectives: To gain insights into the pathogenesis of neuropsychiatric systemic lupus erythematosus (NPSLE) and identify potential drug targets through investigation of whole-blood human transcriptome. Methods: We analysed differentially expressed genes in peripheral blood from active central nervous system (CNS) lupus (n = 26) and active non-neuropsychiatric SLE (n = 38) patients versus healthy controls (n = 497) from the European PRECISESADS project (NTC02890121). …”
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Sulfur redirects carbon metabolism to optimize nitrogen utilization and promote andrographolide biosynthesis in Andrographis paniculata seedlings by Shao-Fen Jian, Yan-Fen Huang, Si Wan, Dong-Liang Chen, Yang Lin, Qiong Liao, Chu Zhong

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Comprehensive Analysis of Hormonal Signaling Pathways and Gene Expression in Flesh Segment Development of Chinese Bayberry (<i>Myrica rubra</i>) by Yihan Fu, Shuwen Zhang, Li Yang, Yu Zong, Yongqiang Li, Xingjiang Qi, Wenrong Chen, Fanglei Liao, Weidong Guo

“…Gene modules positively correlated with flesh segment development were identified using transcriptome-based weighted gene co-expression network analysis (WGCNA). …”
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The involvement of PsTCP genes in hormone-mediated process of bud dormancy release in tree peony (Paeonia suffruticosa) by Qianqian Wang, Bole Li, Zefeng Qiu, Jiayi Ying, Xuyichen Jin, Zeyun Lu, Junli Zhang, Xia Chen, Xiangtao Zhu

“…Transcriptome sequencing and analysis of expression profiles were conducted to identify the crucial genes implicated in the dormancy release mechanism of tree peony. …”
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Comparative gene expression analysis of Beauveria bassiana against Spodoptera frugiperda by Hamdy H. Aly, Yun Meng, Dun Wang

“…Methods A combination of bioassays and transcriptome analysis was employed. S. frugiperda larvae were exposed to different spore concentrations, and mortality rates were recorded at various developmental stages. …”
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