Mechanism of Exogenous Jasmonic Acid-Induced Resistance to <i>Thrips palmi</i> in <i>Hemerocallis citrina</i> Baroni Revealed by Combined Physiological, Biochemical and Transcripto... by Zhuonan Sun, Ning Ma, Ye Yang, Jun Wang, Nan Su, Hongxia Liu, Jie Li

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Exploring Potential Causal Links: How Parkinson&amp;rsquo;s Disease Brain Damage Impacts Liver Health&amp;ndash;A Mendelian Randomization and Transcriptomic Study by Liu T, Chen Q, Wu H, Li J, Xian M, Lu K, Zhu C, Wei J

“…Furthermore, the impact of PD treatment drugs on liver function was also evaluated. These findings provide important insights for the development of future PD treatment strategies, and further clinical research is needed to validate and optimize clinical interventions to maximize treatment efficacy and minimize side effects in patients with PD.Keywords: Parkinson’s disease, chronic hepatitis, Mendelian randomization analysis, serum metabolites, cysteine…”
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Comprehensive transcriptomic analysis integrating bulk and single-cell RNA-seq with machine learning to identify and validate mitochondrial unfolded protein response biomarkers in... by Lu Zhang, Lei Yue, Peng Jia, Peng Jia, Ziqi Cheng, Jiwen Liu

“…Additionally, in the single-cell transcriptome data, these biomarkers were predominantly enriched in neutrophils. …”
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Volatile Metabolome and Transcriptomic Analysis of <i>Kosakonia cowanii</i> Ch1 During Competitive Interaction with <i>Sclerotium rolfsii</i> Reveals New Biocontrol Insights by Yoali Fernanda Hernández Gómez, Jacqueline González Espinosa, Griselda Catalina Olvera Rivas, Jackeline Lizzeta Arvizu Gómez, José Humberto Valenzuela Soto, Miguel Angel Ramos López, Aldo Amaro Reyes, Eloy Rodríguez de León, Carlos Saldaña, José Luis Hernández Flores, Juan Campos Guillén

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Transcriptome Analysis Reveals <i>PpMYB1</i> and <i>PpbHLH1</i> Promote Anthocyanin Accumulation in <i>Phalaenopsis pulcherrima</i> Flowers by Jianqiang Wen, Ji Li, Kunlin Wu, Jingjue Zeng, Lin Li, Lin Fang, Songjun Zeng

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Whole-transcriptome analysis reveals the characteristics of intramuscular fat circRNA expression and its associated network in grazing yaks of different months of age under cold st... by Yaqian Liu, Yonggang Sun, Yincang Han, Weiqin Ding, Shengwei Jin, Jianyu Chen, Fajie Gou

“…Whole-transcriptome analysis reveals the characteristics of intramuscular fat circRNA expression and its associated network in grazing yaks of different months of age under cold stress. …”
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Integration of histopathology, transcriptomics and non-targeted metabolomics reveals toxic effects of thiamethoxam under acute stress in mirror carp (Cyprinus carpio var. Longke-11... by Dongchang Guo, Wenyang Song, Manhong Liu, Haixia Jiang, Xiaolong Wang, Zhiying Jia, Bin Xu

“…In this study, using histopathology, transcriptomics, and non-targeted metabolomics, the toxic effects of different concentrations of THM under acute stress (96 h) were investigated in mirror carp (Cyprinus carpio var. …”
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Transcriptome Profiling of Spike Development Reveals Key Genes and Pathways Associated with Early Heading in Wheat–<i>Psathyrstachys huashanica</i> 7Ns Chromosome Addition Line by Binwen Tan, Yangqiu Xie, Hang Peng, Miaomiao Wang, Wei Zhu, Lili Xu, Yiran Cheng, Yi Wang, Jian Zeng, Xing Fan, Lina Sha, Haiqin Zhang, Peng Qin, Yonghong Zhou, Dandan Wu, Yinghui Li, Houyang Kang

“…To explore the potential molecular mechanisms underlying the early heading, we performed transcriptome analysis at four different developmental stages of the 7Ns disomic addition line and its wheat parents. …”
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Permanent crop cover as a strategy for drought-resistant viticulture: insights on how rhizosphere metagenomics influences leaf-level -omics for an enhanced overall plant response by Iván Jáuregui, María Ancín, José M. García-Mina, José M. García-Mina, Angel M. Zamarreño, Angel M. Zamarreño, Ariadna Iglesias-Sanchez, Ariadna Iglesias-Sanchez, Igor Florez-Sarasa, Igor Florez-Sarasa, Iker Aranjuelo

“…Our study is the first to show that cover cropping can boost cash crop resilience to drought through intricate plant–soil–microbe interactions, providing benefits from the outset.…”
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CXCL14 drives age-related intervertebral disc degeneration via NF-κB pathway activation in a multiomic study by Tianle Zhou, Tonghui Zhang, Qiwang He, Zhiwen Zhang, Yong Huang, Zijun Chen, Wei Wang

“…We used transcriptomic and proteomic analyses to identify key regulatory genes associated with IDD. …”
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Molecular mechanisms underlying cashmere quality differences between Jiangnan cashmere goats and Changthangi pashmina goats by Gao Gong, Shijie Bi, Xin Liang, Yu Ao, Feng Xu, Yiming Sulaiman

“…These genes play an important role in the development of secondary hair follicles and the formation of cashmere quality in cashmere goats, providing a theoretical basis for the genetic improvement of cashmere goats in the future.…”
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Actively expressed microbiota in mucosal biopsies of treatment-naïve ulcerative colitis patients by Line Strand Karlsholm, Rafi Ahmad, Hagar Taman, Christopher G. Fenton, Ruth H. Paulssen

“…Transcriptomic sequences that mapped to the human genome were removed from the dataset. …”
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Dataset from RNAseq analysis of differential gene expression in germinal vesicle and metaphase I stages of granulosa cellsNational Center for Biotechnology Information by Weijun Gong, Xiangqian Meng, Ping Lei, Penghao Li, Jing Li, Yan Zhu

“…We further evaluated the transcriptomic data via genomes from gene banks. Thus, these new data demonstrate the feasibility of obtaining reliable transcriptomic data from individual samples at different developmental stages, and provide a framework for systematic transcriptomic studies of granulosa cell development.…”
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Multiomics analyses of the effects of LED white light on the ripening of apricot fruits by Chunmei Bai, Yanyan Zheng, Christopher Brian Watkins, Lili Ma, Yuanye Jiang, Shaoqing Chen, Hongwei Wang, Xuelian He, Lichun Han, Xinyuan Zhou, Qing Wang, Caie Wu, Jinhua Zuo

“…These data were combined with transcriptomic, metabolomic, and ATAC-Seq data from fruits taken on 8 d of treatment to provide insight into the potential mechanism by which LED treatment delays ripening. …”
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Function analysis of LIPI-4 in Listeria monocytogenes reveals a key role of flagella formation in the regulation of virulence by Caixia Liu, Xun Ma, Bin Jia, Ruixuan Qian, Shengjie Gao, Lu Liu, Yatao Qi, Zhongke Yin, Guangdong Hu, Jing Wang

“…Our research demonstrates that LIPI-4 promotes flagellum formation through metabolic regulation, thereby enhancing L. monocytogenes colonization and cellular invasion. This discovery provides novel insights into the pathogenic mechanisms of L. monocytogenes.…”
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Improvement of D-lactic acid production from methanol by metabolically engineered Komagataella phaffii via ultra-violet mutagenesis by Yoshifumi Inoue, Kaito Nakamura, Ryosuke Yamada, Takuya Matsumoto, Hiroyasu Ogino

“…The resulting mutant strain DLac_Mut2_221 produced 5.38 g/L of D-lactic acid from methanol, a 1.52-fold increase compared to the parent strain GS115/S8/Z3. The transcriptome analysis of the mutant DLac_Mut2_221 identified 158 differentially expressed genes, providing insights into key mechanisms contributing to enhanced D-lactic acid production. …”
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Degradation of lignocellulose by different bacterial and fungal co-cultures by Julian Detain, Ludovic Besaury

“…This work provided the proof of concept for technological feasibility, pertinence and usefulness of interdomain co-culture.…”
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Rapgef3 modulates macrophage reprogramming and exacerbates synovitis and osteoarthritis under excessive mechanical loading by Wen Tang, Jian-bin Yin, Ren-gui Lin, Chun-yu Wu, Jia-luo Huang, Jin-jian Zhu, Ling-feng Yang, Guang-ming Li, Dao-zhang Cai, Liang-liang Liu, Yan-li Liu, Hai-yan Zhang

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Metabolic mapping of the human solute carrier superfamily by Tabea Wiedmer, Shao Thing Teoh, Eirini Christodoulaki, Gernot Wolf, Chengzhe Tian, Vitaly Sedlyarov, Abigail Jarret, Philipp Leippe, Fabian Frommelt, Alvaro Ingles-Prieto, Sabrina Lindinger, Barbara M G Barbosa, Svenja Onstein, Christoph Klimek, Julio Garcia, Iciar Serrano, Daniela Reil, Diana Santacruz, Mary Piotrowski, Stephen Noell, Christoph Bueschl, Huanyu Li, Gamma Chi, Stefan Mereiter, Tiago Oliveira, Josef M Penninger, David B Sauer, Claire M Steppan, Coralie Viollet, Kristaps Klavins, J Thomas Hannich, Ulrich Goldmann, Giulio Superti-Furga

“…Targeted metabolomics provided a fingerprint of 189 intracellular metabolites, while transcriptomics offered insights into cellular programs modulated by SLC expression. …”
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Foliar calcium application reduces fluorine accumulation in tea plant by regulating cell wall structure and gene expression by Jinlei Luo, Jinlei Luo, Lintao Zhang, Daili Li, Shuangjie Huang, Chunlei Li, Yi Chen, Yi Chen, Peng Yin, Wei Liu, Mufang Sun, Mufang Sun, Guiyi Guo, Guiyi Guo, Guiyi Guo

“…All the results suggest that Ca may lessen the tea leaf F level by reducing the accumulation of cell wall materials and intervening the cell wall structure and gene expression. This study provided useful information for reducing the F level and solving the F safety problem in tea plant.…”
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