A comprehensive RNA virome identified in the oyster Magallana gigas reveals the intricate network of virus sharing between seawater and mollusks by Shuang Wu, Yimin Ni, Shuling Yan, Yongxin Yu, Yongjie Wang

“…M. hongkongensis has been found to harbor the most diverse viruses found in M. gigas, while 37 and 25 newly identified RNA viruses in oysters were discovered in an octopus meta-transcriptome and seawater virome, respectively. Conclusions The findings provide insights into the cryptic and hitherto unstudied virus-sharing network across the marine food web. …”
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Impact of β-Carotene Enrichment on Carotenoid Composition and Gene Expression in <i>Artemia</i> Metanauplii by Weilong Wang, Zhuojun Ma, Weiquan Li, Yucai Xue, Amina S. Moss, Meiqin Wu

“…Additional functional insights are provided by the gene BCO2, which regulates pigmentation by preventing excessive carotenoid accumulation, along with ketolase and hydroxylase enzymes in carotenoid metabolic pathways. …”
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Analysis of the transcriptional profile of mononuclear cells from e-cigarette users by Carlos Camero, María José Peña, Camila Bernal, Daniel González, Litzy Gisella Bermudez, Zully Pulido, David Padilla, Alexis Infante, Alejandra Cañas, Liliana Lopez-Kleine, Adriana Rojas

“…We evaluated the transcriptomic profile of peripheral blood mononuclear cells from users of electronic nicotine delivery systems. …”
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Chronic Exposure to Field-Level Thiamethoxam Impairs Gut Tissue and Reduces Honeybee (<i>Apis cerana</i>) Survival by Yulong Guo, Changsheng Ma, Wenzheng Zhao, Haiou Kuang, Yakai Tian, Haoyuan Zhang, Yunfei Xue, Hongmei Li-Byarlay, Kun Dong, Xueyang Gong

“…Head transcriptomic results indicated that the activation of pathways including pyruvate metabolism, glycolysis/gluconeogenesis, thiamine metabolism, and riboflavin metabolism might negatively affect the stability of the neural system in <i>A. cerana</i>. …”
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RNA sequencing and genome-wide association analysis reveal key genes responsible for different feather colors in Youjiang goose by Mengli Zhao, Xiaoming Li, Jian Wang, Lei Zhang, Haiyue Cao, Meng Wu, Hongchang Zhao, Rongchao Ji, Gansheng Zhang, Guoshun Chen, Xiujun Duan

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IGF2/IGFBP4 reduces apoptosis and increases free cholesterol of chicken granulosa cells in vitro by Wenhui Zhang, Xuejiao Chen, Axiu Guo, Zongyi Zhao, Bo Zhang, Fuwei Li, Hao Zhang

“…Therefore, this study provides new evidence on the functions of IGFs and IGFBPs in chickens, establishing a crucial experimental foundation for understanding the regulatory mechanisms of follicle selection. …”
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Comparison and Analysis of Resistance Differences in <i>Alternaria alternata</i> from Fungicides with Three Different Mechanisms by Qian Bai, Xinbo Ma, Mansoor Hayat, Yuxin Tang, Zhanbin Wang

“…Taken together, this study provides a theoretical basis for developing more effective fungicides and chemical control strategies against <i>A. alternata</i>.…”
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Integrative analysis of semaphorins family genes in colorectal cancer: implications for prognosis and immunotherapy by Jiahao Zhu, Benjie Xu, Zhixing Wu, Zhixing Wu, Zhiwei Yu, Shengjun Ji, Jie Lian, Haibo Lu

“…It also reveals tumor heterogeneity and provides valuable biological insights in CRC.…”
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Identification of Ethylene Response Factors in Wheat Reveals That <i>TaERF16-B</i> Contributes to Salt Tolerance by Lei Zhang, Aili Wei, Jiating Chen, Lijuan Wu, Tian Li, Linyi Qiao

“…A Kompetitive Allele-Specific PCR marker K52 was developed for genotyping <i>TaERF16-B</i> haplotypes, which further confirmed the significant correlation between <i>TaERF16-B</i> and salt tolerance-related phenotypes in mapping population and wheat germplasms. This study provides new genes and molecular markers for improving salt tolerance in wheat.…”
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Subclinical ketosis in postpartum dairy cows alters the adipose tissue immunological profile in a depot-specific manner by Tainara C. Michelotti, Bruno C. Menarim, Alexandra P. Tegeler, Jean F. Fiallo Diez, Vinicius S. Machado, Yava Jones-Hall, Oscar J. Benitez, Oscar J. Benitez, Shavahn C. Loux, Clarissa Strieder-Barboza, Clarissa Strieder-Barboza

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Metabolic Regulation and Molecular Mechanism of Salt Stress Response in Salt-Tolerant <i>Astragalus mongholicus</i> by Yuxiao Liu, Jinhua Sheng, Jiaqing Yang, Xingcong Li

“…In particular, LQ alleviated salt stress damage and enhanced salt tolerance by increasing oxidase activities in its flavonoid and phenylalanine metabolic pathways and regulating the expression of key genes and enzymes. This study provides valuable insights and empirical data to support the selection of appropriate <i>Astragalus mongholicus</i> germplasms for saline regions and the development of improved cultivars.…”
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Integrated Volatile Compounds and Transcriptional Gene Analysis Elucidate the Deterioration Mechanism of Embryo Rice During Storage by Xiyuan Yang, Tingting Su, Lixue Ma, Xindi Mu, Hui Wang, Lei Xu, Lidong Wang, Baijun Wang, Di Yao, Changyuan Wang

“…These results can provide a theoretical basis for the evaluation of quality and selection of storage method of embryo rice.…”
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Optimal Vase Solution for <i>Gerbera hybrida</i> Cut Flower Keeping Fresh by Activating SA and Cytokinin Signaling and Scavenging Reactive Oxygen Species by Chaoshui Xia, Yiyang Cao, Weixin Gan, Huifeng Lin, Huayang Li, Fazhuang Lin, Zhenhong Lu, Weiting Chen

“…These results provide valuable insights into the mechanisms underlying the extended VL of gerbera cut flowers and offer a foundation for developing more effective preservation techniques.…”
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Identification of Salt Tolerance-Related <i>NAC</i> Genes in Wheat Roots Based on RNA-Seq and Association Analysis by Lei Zhang, Aili Wei, Weiwei Wang, Xueqi Zhang, Zhiyong Zhao, Linyi Qiao

“…In this study, 446 <i>NAC</i> sequences were isolated from the whole genome of common wheat and classified into 118 members based on subgenome homology, named <i>TaNAC1</i> to <i>TaNAC118</i>. Transcriptome analysis of salt-tolerant wheat breeding line CH7034 roots revealed that 144 of the 446 <i>TaNAC</i> genes showed significant changes in expression levels at least two time points after NaCl treatment. …”
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Exploring the molecular mechanism of OsROS1a in regulating resistance to bacterial leaf streak through transcriptome and DNA methylation profiling in rice (Oryza sativa L.) by Xiaofang Xie, Xuansong Yang, Libin Lu, Tong Li, Mingyue Qin, Huazhong Guan, Yan Zheng, Tao Lan, Weiren Wu

“…Integration of the methylome and transcriptome data revealed 112 overlapping differentially methylated and expressed genes (DMEGs). …”
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Regulatory signatures involved in the cell cycle pathway contribute to egg production heterosis in chicken by Jingwei Yuan, Yuanmei Wang, Yanyan Sun, Yunlei Li, Aixin Ni, Qin Li, Hanhan Yang, Xinying Xu, Yunhe Zong, Hui Ma, Jilan Chen

“…The high-quality transcriptomes of ovary for purebreds (WW and YY) and crossbreds (WY and YW) in 5 laying stages were sequenced and integrated to identify regulatory networks relevant to the heterosis. …”
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Evaluation of the predictive ability of ultrasound-based assessment of breast cancer using BI-RADS natural language reporting against commercial transcriptome-based tests. by Neema Jamshidii, Jason Chang, Kyle Mock, Brian Nguyen, Christine Dauphine, Michael D Kuo

“…The identification of sonographic correlates of gene tests provides added value to the ultrasound exam without incurring additional procedures or testing.…”
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<i>OsVPS16</i> Deficiency Enhances Salinity Tolerance in Rice by Regulating Ion Homeostasis, Antioxidant Activity, and Stress-Responsive Gene Expression by Juan Liu, Mingming Tang, Yun Lu, Huimin Yan, Yang Liu, Yongrun Cao, Xiaohua Song, Qiuyuan Liu, Xin Ji

“…This study not only elucidates the function of a novel salt stress response gene in rice, but also provides valuable genetic resources for developing salt-tolerant rice cultivars through molecular breeding approaches.…”
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Single-cell sequencing and spatial transcriptomics reveal the evolution of glucose metabolism in hepatocellular carcinoma and identify G6PD as a potential therapeutic target by Deyang Xi, Deyang Xi, Yinshuang Yang, Jiayi Guo, Jiayi Guo, Mengjiao Wang, Mengjiao Wang, Xuebing Yan, Chunyang Li

“…BackgroundGlucose metabolism reprogramming provides significant insights into the development and progression of malignant tumors. …”
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High temporal-resolution transcriptome landscape reveals the biological process and regulatory genes of melanin deposition in breast muscle of Silkie chickens during embryonic deve... by Xinting Yang, Bowen Ma, Qingyu Zhao, Yaxiong Jia, Qingshi Meng, Yuchang Qin, Chaohua Tang, Junmin Zhang

“…High temporal-resolution transcriptome analysis was performed in the breast muscle of Silkies across 13 embryonic time points. …”
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