Comparing the Transcriptomes of Two Different Tissues in Helicoverpa assulta (Guenée) by Hailing Zhang, Kuiyin Li, Yubo Zhang

“…Our findings based on transcriptome sequencing, data assembly, and functional gene annotation of two different tissues in H. assulta will provide a valuable reference for further excavation and study of functional genes in H. assulta.…”
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Physiology and transcriptome of Eucommia ulmoides seeds at different germination stages by Jia Liu, Sumei Qiu, Tingting Xue, Yingdan Yuan

“…This study provides a basis for further research into the regulatory mechanisms of E. ulmoides seeds at different germination stages and the relationship between other seed germination and plant hormones.…”
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Transcriptomic difference analysis of Meyerozyma guilliermondii in response to salt stress by CAO Xuan, ZHENG Xiaodong

“…Based on the above results, the transcriptome sequencing of the strain cultured under salt stress and non-salt stress for 24 h was constructed by Illumina HiSeq^TM in this study. …”
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Dissection of tumoral niches using spatial transcriptomics and deep learning by Karla Paniagua, Yu-Fang Jin, Yidong Chen, Shou-Jiang Gao, Yufei Huang, Mario Flores

“…TG-ME can potentially provide insights into the spatial organization of tumor microenvironments (TME), highlighting specific niche compositions and their molecular changes along cancer progression. …”
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Deciphering the transcriptomic regulation of heat stress responses in Nothofagus pumilio. by Maximiliano Estravis-Barcala, Katrin Heer, Paula Marchelli, Birgit Ziegenhagen, María Verónica Arana, Nicolás Bellora

“…Through the performance of RNA-seq of leaves of plants exposed to 20°C (control) or 34°C (heat shock), we generated the first transcriptomic resource for the species. We also studied the changes in protein-coding transcripts expression in response to heat. …”
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Spatial Transcriptomics in Thyroid Cancer: Applications, Limitations, and Future Perspectives by Chaerim Song, Hye-Ji Park, Man S. Kim

“…Spatial transcriptomics (ST) is emerging as a powerful technology that transforms our understanding of thyroid cancer by offering a spatial context of gene expression within the tumor tissue. …”
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Single-cell transcriptomic analysis of chondrocytes in cartilage and pathogenesis of osteoarthritis by Changyuan Huang, Bin Zeng, Bo Zhou, Guanming Chen, Qi Zhang, Wenhong Hou, Guozhi Xiao, Li Duan, Ni Hong, Wenfei Jin

“…In summary, this study significantly enhanced our understanding of cell heterogeneity of chondrocytes in articular cartilage and provides insight into the pathogenesis of OA.…”
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Transcriptome profiling of Hyacinthus orientalis L. cultivars in floral pigmentation by Kwan-Ho Wong, Hoi-Yan Wu, Cheryl Wood-Yee Shum, Jerome Ho-Lam Hui, Pang-Chui Shaw, David Tai-Wai Lau

“…In addition, scarce genomic resource of the species hinders the exploration on the molecular mechanism in controlling the diversification of floral colour. In this study, transcriptome profiling was conducted on seven hyacinth cultivars, each representing a major flower colour. …”
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Unravelling the transcriptome of the human tuberculosis lesion and its clinical implications by Kaori L. Fonseca, Juan José Lozano, Albert Despuig, Dominic Habgood-Coote, Julia Sidorova, Diego Aznar, Lilibeth Arias, Álvaro Del Río-Álvarez, Juan Carrillo-Reixach, Aaron Goff, Leticia Muraro Wildner, Shota Gogishvili, Keti Nikolaishvili, Natalia Shubladze, Zaza Avaliani, Gustavo Tapia, Paula Rodríguez-Martínez, Pere-Joan Cardona, Federico Martinón-Torres, Antonio Salas, Alberto Gómez-Carballa, Carolina Armengol, Simon J. Waddell, Myrsini Kaforou, Anne O’Garra, Sergo Vashakidze, Cristina Vilaplana

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STP: single-cell partition for subcellular spatially-resolved transcriptomics by Haoyang Li, Qinan Hu, Zhaowen Qiu, Hui Xiong, Yuhui Hu, Xin Gao

“…Abstract Spatially-resolved transcriptomics (SRT) technologies now allow exploration of gene expression with spatial context. …”
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Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis). by Timothy I Shaw, Anuj Srivastava, Wen-Chi Chou, Liang Liu, Ann Hawkinson, Travis C Glenn, Rick Adams, Tony Schountz

“…The Jamaican fruit bat transcriptome dataset is a resource that should provide additional candidate markers for studying bat evolution and ecology, and tools for analysis of the host response and pathology of disease.…”
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Metabolomic and transcriptomic analyses of drought resistance mechanisms in sorghum varieties by Li Yue, Hui Wang, Qimike Shan, Zaituniguli Kuerban, Hongyan Mao, Ming Yu

“…In summary, our results provide a theoretical basis for a deeper understanding of the molecular mechanism of sorghum drought resistance and new genetic resources for subsequent research.…”
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Multimodal spatial transcriptomic characterization of mouse kidney injury and repair by Qiao Xuanyuan, Haojia Wu, Hemalatha Sundaramoorthi, Pierre Isnard, Changfeng Chen, Waleed Rahmani, Benjamin D. Humphreys

“…Utilizing high-resolution Xenium and whole transcriptome Visium spatial transcriptomics platforms, we analyze over a million cells on 12 male mouse kidneys across six stages of renal injury and repair. …”
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Transcriptome Classification Reveals Molecular Subgroups in Idiopathic Pulmonary Fibrosis by Yuxia Liu, Chang Xu, Wenxin Gao, Huaqiong Liu, Chenglong Li, Mingwei Chen

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Effects of Serum Metabolites on the Pancreatic Transcriptome in Acute Acalculous Cholecystitis by Yuanyuan Sun, Qiang Wang, Chenjun Hao, Dongbo Xue

“…Background. To provide a basis for the diagnosis and treatment of acalculous biliary pancreatitis, this study investigated the impact of serum metabolites on the pancreatic transcriptome in acute acalculous cholecystitis (AAC). …”
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Development of hop transcriptome to support research into host-viroid interactions. by Tine Pokorn, Sebastjan Radišek, Branka Javornik, Nataša Štajner, Jernej Jakše

“…Expression fluctuations were observed for the majority of targets, with possible evidence of downregulation of GATA transcription factor by CBCVd- and of linoleate 13S-lipoxygenase by HLVd-derived small RNAs. These results provide a deep transcriptome of hop and the first insights into complex viroid-hop plant interactions.…”
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Single-cell transcriptomics analysis of the healing process of ligament rupture by Haibo Zhao, Jianbao Gong, Tengbo Yu, Yingze Zhang

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Transcriptomic analysis of Phytophthora infestans races and evaluation of their pathogenicity on potato by Linmei Deng, Jianjun Hao, Jiawen Feng, Jing Zhao, Jian Dao, Gaihuan Xu, Kunyan Zhou, Yajin Xu, Wenping Wang, Shunhong Zhang, Chunjiang Liu, Meng Chen, Yanli Yang, Xia Liu

“…To explore the genetic mechanisms behind these, different physiological races of P. infestans were inoculated on potato leaves and assayed through transcriptomics combined with metabolic profiling methods. …”
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Hormonal and transcriptomic regulation of drought adaptation in barley roots and leaves by Anna Collin, Magdalena Pacwa-Plociniczak, Tomasz Plociniczak, Ôndrej Novak, Marek Marzec, Wenbin Guo, Craig G. Simpson, Agata Daszkowska-Golec

“…Collectively, these findings provide valuable insights into the multilayered adaptive strategies of barley under drought stress.…”
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Genome and Tissue‐Specific Transcriptome of the Tropical Milkweed (Asclepias curassavica) by Honglin Feng, Jing Zhang, Adrian F. Powell, Gretta L. Buttelmann, Lily Yang, Ethan Yan, Fumin Wang, Steven B. Broyles, Georg Jander, Susan R. Strickler

“…Together, this genome sequence and transcriptome analysis provide important resources for further investigation of the ecological and medicinal uses of A. curassavica.…”
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