Functional Differentiation Reconfiguration in the Midgut of <i>Nezara viridula</i> (Hemiptera: Pentatomidae) Based on Transcriptomics: Multilayer Enrichment Analysis and Topologica... by Dongyue Yu, Jingyu Liang, Wenjun Bu

“…The established multi-level analytical framework provides a robust methodology for subsequent dissection of complex biological systems, identification of key molecular targets for functional validation, and for the development of novel pest control strategies.…”
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Transcriptome analysis reveals a de novo DNA element that may interact with chromatin-associated proteins in Plasmodium berghei during erythrocytic development by Adaobi Okafor, Yagoub Adam, Benedikt Brors, Ezekiel Adebiyi

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Physiological and transcriptome analysis of changes in endogenous hormone contents and related synthesis and signaling genes during the heat stress in garlic (Allium sativum L.) by Qing-qing Yang, Ji-De Fan, Can-yu Liu, Yong-qiang Zhao, Zhi-sheng Xu, Xin-juan Lu, Jie Ge, Bi-wei Zhang, Meng-qian Li, Yan Yang, Feng Yang

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Primary metabolomics and transcriptomic techniques were used to explore the regulatory mechanisms that may influence the flavor characteristics of fresh Corylus heterophylla × Cory... by Minmin Lu, Tiantian Xie, Yaru Wang, Jieyan Yang, Yan Bai, Shuang Gao, Xiaofan Wu, Xiuqing Yang

“…To explore the flavor related regulatory mechanisms of fresh Corylus heterophylla × Corylus avellana, a joint analysis of metabolome and transcriptome were utilized to compare the two typical C. heterophylla × C. avellana varieties with different flavors (‘yuzhui’ and ‘pingou21’) in this paper. …”
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Transcriptomic analysis of liquid non-sporulating Streptomyces coelicolor cultures demonstrates the existence of a complex differentiation comparable to that occurring in solid spo... by Paula Yagüe, Antonio Rodríguez-García, María Teresa López-García, Beatriz Rioseras, Juan Francisco Martín, Jesús Sánchez, Angel Manteca

“…The aim of this work was to compare the transcriptomes of S. coelicolor growing in liquid and solid cultures, deepening the knowledge of Streptomyces differentiation. …”
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A single-cell transcriptomic atlas of all cell types in the brain of 5xFAD Alzheimer mice in response to dietary inulin supplementation by Xiaoyan Wang, Houyu Zhang, Zhou Wan, Xuetong Li, Carlos F. Ibáñez, Meng Xie

“…Conclusions These results provide a comprehensive overview on the transcriptomic changes in individual cells of the entire mouse brain in response to high fiber intake and a resourceful foundation for future mechanistic studies on the influence of diet and gut microbiome on the brain during neurodegeneration.…”
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Integrated Transcriptomics and Metabolomics Reveal Key Genes and Metabolic Pathway in Flower and Fruit Color Formation of <i>Cerasus humilis</i> (Bge.) Sok by Shuai Zhang, Tianyuan Li, Shan Liu, Xinliang Qi, Yu Yang, Jiancheng Zhang, Luting Jia, Pengfei Wang, Xiaopeng Mu

“…Further metabolomic and transcriptomic correlation analyses identified that <i>ChMYB9</i> and <i>ChMYB12</i> exhibited strong positive associations with anthocyanin pathway metabolites in both floral and fruit tissues. …”
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Transcriptome analysis reveals glycometabolism and antioxidation-related genes involved in the antifungal immune response of Spodoptera frugiperda larvae against Beauveria bassiana... by Yongkai MAO, Jiequn YI, Yinjie CHENG, Han WU, Jihu LI, Mingjiang LIN, Hanliang XU, Zhenqiang QIN, Jianbai LIU

“…This study enhances our understanding of the molecular mechanisms related to regulation of metabolism and provides a basis for exploring new methods to combat antifungal resistance in S. frugiperda.…”
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Integrating Clinical and Transcriptomic Profiles Associated with Vitamin D to Enhance Disease-Free Survival in Cervical Cancer Recurrence Using the CatBoost Algorithm by Geeitha Senthilkumar, Renuka Pitchaimuthu, Seshathiri Dhanasekaran, Prabu Sankar Panneerselvam

“…<b>Methods</b>: A transcriptomic analysis of CaSki cervical cancer cells using data from the GEO dataset GSE267715 identified that vitamin D controls genes that prevent cervical cancer recurrence. …”
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Revealing common differential mRNAs, signaling pathways, and immune cells in blood, glomeruli, and tubulointerstitium of lupus nephritis patients based on transcriptomic data by Haifang Zhao, Dongxia Zheng

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Single-cell transcriptomic analysis identifies systemic immunosuppressive myeloid cells and local monocytes/macrophages as key regulators in polytrauma-induced immune dysregulation by Drishti Maniar, M. Cole Keenum, Casey E. Vantucci, Tyler Guyer, Paramita Chatterjee, Kelly Leguineche, Kaitlyn Cheung, Robert E. Guldberg, Krishnendu Roy

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Differential transcriptome analysis of different resistant citrus varieties infected with wild-type and toxin synthesis-impaired strains causing Alternaria brown spot by MA Hui, MA Haijie, JIAO Chen, LI Hongye

“…In conclusion, the molecular regulatory mechanisms and key functional genes involved in the response of citrus varieties to ACT are preliminarily clarified, which provide a theoretical basis for the molecular breeding of citruses against Alternaria brown spot.…”
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Transcriptomic Insights into Salt Stress Tolerance Mechanisms in <i>Melia azedarach</i>: 24-Epibrassinolide-Mediated Modulation of Auxin and ABA Signaling Pathways by Xiaoxian Li, Zin Myo Htet, Hong Chen, Jianbing Liu, Fangyuan Yu

“…Transcriptomic analysis identified 11,747 differentially expressed genes (DEGs) in the salt-treated versus control seedlings (SA vs. …”
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Genome-wide association study and transcriptomic analysis reveal the crucial role of sting1 in resistance to visceral white-nodules disease in Larimichthys polyactis by Jiajie Zhu, Feng Liu, Ting Ye, Qian Li, Haowen Liu, Sifang Liu, Tianle Zhang, Dandan Guo, Junquan Zhu, Bao Lou

“…Then, the integration of GWAS and transcriptome analysis identified seven key genes associated with resistance to VWND. …”
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Comprehensive Transcriptomic Analysis of Brain Tissues From the Infarcted Area of MCAO Rats Revealed That Acupuncture Attenuates Brain Injury via the Complement System by Yanlin Liu, Yuting Jin, Yuxin Liu, Jiaqi Gao, Xiaomei Wang, Hongbin Ren, Yabo Hao, Xibin Yang, Kaitao Luo

“…ABSTRACT Objective This research focused on investigating acupuncture's effect on brain injury in middle cerebral artery occlusion (MCAO) rats and elucidating its potential mechanisms, with a focus on transcriptomic and protein‐level changes related to the complement system, which may be involved in acupuncture's therapeutic effects. …”
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Integrative QTL Mapping and Transcriptomic Profiling to Identify Growth-Associated QTL and Candidate Genes in Hong Kong Catfish (<i>Clarias fuscus</i>) by Yian Zhu, Dayan Zhou, Yijun Shen, Chuanhao Pan, Yu Chen, Yulei Zhang, Binlan Yang, Guangli Li, Huapu Chen, Changxu Tian

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Phenotypic and transcriptomic analysis reveals key genes associated with plant height in rubber tree and functional characterization of the candidate gene HbFLA11 by Baoyi Yang, Yuanyuan Zhang, Weiguo Li, Xiao Huang, Xinsheng Gao, Juncang Qi, Xiangjun Wang

“…These results suggest that HbFLA11 is involved in gibberellin signaling and cell wall biosynthesis, thereby regulating plant growth. This study provides valuable genetic resources and research foundations for targeted trait breeding in rubber tree.…”
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Transcriptomic analysis reveals candidate molecular pathways involved in pea (Pisum sativum L.) resistance to pea aphid (Acyrthosiphon pisum Harris) biotypes by Rémi Ollivier, Stéphanie Robin, Marc Galland, Po-Yuan Shih, Stéphanie Morlière, Maria K. Paulmann, Jonathan Gershenzon, Grit Kunert, Marie-Laure Pilet-Nayel, Jean-Christophe Simon, Akiko Sugio

“…This locus confers partial resistance to the pea-adapted and non-adapted A. pisum biotypes. Transcriptomic analyses of pea genotypes with and without aphid infestation revealed 9,217 differentially expressed genes in pea genotypes infested with the pea-adapted aphids, while fewer genes, 1,561 genes total, were expressed in response to the pea non-adapted aphids. …”
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Single-cell transcriptomics and time-series metabolite profiling reveal the spatiotemporal regulation of flavonoid biosynthesis genes and phytohormone homeostasis by PAP1 in Arabid... by Bingxu Zhang, Thomas Ka Yam Lam, Linheng Chen, Chen Zhang, Liping Zhu, Hailei Zhang, Pengxi Wang, Jianing Wang, Zongwei Cai, Yiji Xia

“…By comparing single-cell transcriptomes of the pap1-D mutant and wild-type plant leaves, we constructed a cell-type-specific atlas of gene expression and high-resolution dynamics of metabolites across developmental stages. …”
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Integrative Transcriptome and Metabolome Analysis Reveals Candidate Genes Related to Terpenoid Synthesis in <i>Amylostereum areolatum</i> (<i>Russulales: Amylostereaceae</i>) by Lixia Wang, Ningning Fu, Ming Wang, Zhongyi Zhan, Youqing Luo, Jianrong Wu, Lili Ren

“…Metabolome (solid-phase microextraction (SPME) combined with gas chromatography–mass spectrometry (GC-MS) and liquid chromatography–mass spectrometry (LC-MS)) and transcriptome (Illumina NovaSeq) profiles were integrated to investigate terpenoid–gene correlations. …”
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