Transcriptomic insights into Candida albicans adaptation to an anaerobic environment by Karen D. Zeise, John R. Erb-Downward, Gary B. Huffnagle

“…In this study, we used RNA sequencing to compare the global transcriptomic profiles of two strains of C. albicans (SC5314 and CHN1) grown purely anaerobically to those grown aerobically. …”
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Dissection of transcriptome and metabolome insights into the polyphyllin biosynthesis in Paris by Ping Xu, Qi Mi, Xiaoye Zhang, Xuan Zhang, Mengwen Yu, Yingsi Gao, Xiheng Wan, Yichun Chen, Qiaoyuan Li, Jia Chen, Guowei Zheng

“…Results In this study, we investigate the global metabolic and transcriptomic profiles of three types of Paris polyphylla var. yunnanensis (Franch.) …”
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Full-Length Transcriptome Sequencing and Comparative Transcriptomics Reveal the Molecular Mechanisms Underlying Gonadal Development in Sleepy Cod (<i>Oxyeleotris lineolata</i>) by Jiajia Fan, Dongmei Ma, Huaping Zhu, Minghui Lin, Zaixuan Zhong, Yuanyuan Tian

“…The expression levels of all 20 screened genes were consistent with the transcriptome sequencing results. The present study provides new genetic resources—including full-length transcriptome sequences and annotation information—as a coding genomic-level reference for sleepy cod—yielding valuable insights into the genetic mechanisms of sex determination and gonadal differentiation in this economically important species.…”
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Advances in Microfluidic Single-Cell RNA Sequencing and Spatial Transcriptomics by Yueqiu Sun, Nianzuo Yu, Junhu Zhang, Bai Yang

“…As omics technologies improve, microfluidic chips can now integrate promising transcriptomics technologies, providing new insights from molecular characterization for tissue gene expression profiles and further revealing the static and even dynamic processes of tissues in homeostasis and disease. …”
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Revealing new mouse epicardial cell markers through transcriptomics. by Lars Bochmann, Padmini Sarathchandra, Federica Mori, Enrique Lara-Pezzi, Domenico Lazzaro, Nadia Rosenthal

“…<h4>Conclusion</h4>This study presents the description of the murine epicardial transcriptome obtained from snap frozen tissues, providing essential information for further analysis of this important cardiac cell layer.…”
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The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis. by Bart A Pannebakker, Urmi Trivedi, Mark L Blaxter, Rebekah Watt, David M Shuker

“…Oviposition in Nasonia therefore clearly modifies the transcriptome, providing a starting point for the genetic dissection of oviposition.…”
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Joint cell segmentation and cell type annotation for spatial transcriptomics by Russell Littman, Zachary Hemminger, Robert Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman

“…Abstract RNA hybridization‐based spatial transcriptomics provides unparalleled detection sensitivity. …”
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Heterogeneity and longitudinal transcriptomic characteristics of Tregs in COVID-19 patients by Yanling Wen, Juanjuan Zhao, Zheng Zhang

“…Understanding these issues is essential for better managing immune responses in COVID-19 patients.MethodsWe collected a cohort of COVID-19 patients with varying disease severity and stage to explore the transcriptomic and functional traits of Tregs in these individuals. …”
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Exploring the genomic and transcriptomic profiles of glycemic traits and drug repurposing by Min-Rou Lin, Cheng-Lin Tsai, Cai-Sian Liao, Chun-Yu Wei, Wan-Hsuan Chou, Tzu-Hung Hsiao, Wei-Chiao Chang

“…The study integrated genetics, transcriptomics, biological pathway analyses, polygenic risk score calculation, and drug repurposing for type 2 diabetes. …”
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Illumina-based transcriptome sequencing of mussel Mytilus coruscus mantle by Bao Linfei, Wang Xinxing, He Jianyu, Fan Meihua, Gao Peng, Liao Zhi

“…The transcriptomic resource can also provide a foundation for further investigations on the formation and bio-mineralization of mussel shell.…”
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Evaluation of the authenticity of Citri Grandis Exocarpium based on metabolomics and transcriptomics by Haiting Huang, Yu Liu, Jianmu Su, Xiangxiu Liang, Hong Wu, Mei Bai

“…The integrative metabolomics and transcriptomics analysis identified 11 key structural genes and transcription factors potentially involved in flavonoid biosynthesis, providing candidate targets for functional validation. …”
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Immunosuppression of spleen in mice treated with erythropoietin: transcriptomic and immunological analysis by Xinyi Lyu, Jiahao Shi, Qi Liu, Mingjun Jiang, Xilian Liu, Yulan Li, Shuqin Ding, Xianpeng Dai

“…The mechanism may be related to the increased anti-inflammatory and immunomodulatory functions caused by M2 cells. The study provides, for the first time, the transcriptomic characteristics and immunological of the spleens of EPO treated mice, providing a new perspective for the study of the effects of EPO on mice.…”
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Transcriptomic regulation of juvenile-to-adult vegetative phase transition in grapevine by Yolanda Ferradás, Carolina Royo, José Miguel Martínez-Zapater, Diego Lijavetzky

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Transcriptomic Analysis of Macrophages Infected with <i>Mycobacterium smegmatis</i> by Hong Sun, Yue Hou, Wenzhao Xu, Wenjing Wang, Na Tian, Dingyi Liu, Zhaogang Sun

“…Therefore, studying the interaction mechanism between macrophages and <i>M. smeg</i> through transcriptomics is conducive to a comprehensive understanding of the related physiological functions of <i>M. smeg</i> in regulating immune responses or immune escape, providing strong evidence for its use as a model alternative bacteria for MTB in the future research on MTB immunity and related physiological functions.…”
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Transcriptome Sequencing and Bioinformatic Analysis of Astragalus sinicus ‘Yuelvfei No. 1’ by Jingyu LI, Yan GU, Liping GONG, Zijian FU, Jiahao ZHONG, Jihua WANG

“…MISA analysis of 13 047 unigenes longer than 1 000 bp identified 4 187 SSR loci, for which corresponding primers were designed.【Conclusion】The transcriptomic information of A.sinicus cultivar 'Yuelvfei No. 1, provides valuable data support for further exploration of resource identification and genetic improvement in A.sinicus.…”
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Metabolic Plasticity and Transcriptomic Reprogramming Orchestrate Hypoxia Adaptation in Yak by Ci Huang, Yilie Liao, Wei Peng, Hai Xiang, Hui Wang, Jieqiong Ma, Zhixin Chai, Zhijuan Wu, Binglin Yue, Xin Cai, Jincheng Zhong, Jikun Wang

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Unveiling unique metabolomic and transcriptomic profiles in three Brassicaceae crops by Liyong Zhang, Isobel A. P. Parkin

“…The results provide a valuable resource for those studying Brassicaceae species and will provide insight into the understanding of metabolic variation among these three important oilseed crops, and provide potential targets for the future breeding of stress tolerant crops.…”
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Developmental transcriptomic patterns can be altered by transgenic overexpression of Uty by Kylie D. Rock, Lillian M. Folts, Hannah C. Zierden, Ruth Marx-Rattner, Nicolae Adrian Leu, Bridget M. Nugent, Tracy L. Bale

“…Abstract The genetic material encoded on X and Y chromosomes provides the foundation by which biological sex differences are established. …”
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Analysis of the Thinopyrum elongatum Transcriptome under Water Deficit Stress by Yongjun Shu, Jun Zhang, You Ao, Lili Song, Changhong Guo

“…The Th. elongatum transcriptome research highlights the activation of a large set of water deficit-related genes in this species and provides a valuable resource for future functional analysis of candidate genes in the water deficit stress response.…”
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Research Progress of Single-Cell Transcriptome Sequencing Technology in Plants by Jianwen Bian, Zelong Zhuang, Xiangzhuo Ji, Rui Tang, Jiawei Li, Jiangtao Chen, Zhiming Li, Yunling Peng

“…This review provides a comprehensive overview of the development and applications of scRNA-seq technology in plant research. …”
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