Stage-specific transcriptomic analysis reveals insights into the development, reproduction and biological function of allergens in the European house dust mite Dermatophagoides pte... by José Cristian Vidal-Quist, Félix Ortego, Bart N. Lambrecht, Stephane Rombauts, Pedro Hernández-Crespo

“…Conclusions This study provides the first genome-wide transcriptomic analysis of a HDM across life stages and sexes, expanding our understanding of the molecular mechanisms underlying mite development, sexual reproduction, and allergen expression. …”
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Transcriptome Analysis of Dryadomyces quercus-mongolicae, a Fungus Associated with Korean Oak Wilt Disease that Causes Oak Mortality in South Korea by Hyowon Park, Jorge R. Ibarra Caballero, Jane E. Stewart, Ned B. Klopfenstein, Uk Lee, Mee-Sook Kim

“…Overall, these findings provide key information on fundamental biological mechanisms of D. quercus-mongolicae.…”
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Integrated transcriptome and metabolome analyses reveals the mechanisms of function loss of Lr29 leaf rust resistance gene at high temperatures in wheat by Liwen Wang, Yang Yu, Hang Li, Mingzhu Lu, Shubo Cao, Ziqi Li, Haoyuan Song, Laszlo Purnhauser, Jinlong Li, Jiajie Wu

“…The resistance gene Lr29 provides wide resistance to LR, but loses its function under high temperatures. …”
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Integrative analysis of transcriptome and metabolome profiling uncovers underlying mechanisms of the enhancement of the synthesis of biofilm in Sporobolomyces pararoseus NGR under... by Dandan Wang, Nan Zeng, Chunji Li, Chunwang Li, Yunjiao Wang, Bin Chen, Jiajia Long, Ning Zhang, Bingxue Li

“…Conclusions These differential genes and metabolites may play an important role in the formation of biofilms by S. pararoseus NGR in response to acidic stress. The results will provide strategies for the development and utilization of beneficial microbial biofilms, and provide theoretical support for the industrial fermentation production of microorganisms to improve their resistance and maintain stable growth.…”
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Global transcriptome analysis of orange wheat blossom midge, Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae) to identify candidate transcripts regulating diapause. by Zhong-Jun Gong, Yu-Qing Wu, Jin Miao, Yun Duan, Yue-Li Jiang, Tong Li

“…<h4>Conclusions/significance</h4>The OWBM transcriptome greatly improves our genetic understanding and provides a platform for functional genomics research of this species. …”
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Transcriptomic profiling of circulating tumor cells from metastatic breast cancer patients reveals new hints in their biological features and phenotypic heterogeneity by Tania Rossi, Sara Bandini, Michele Zanoni, Michela Cortesi, Michela Palleschi, Erika Bandini, Andrea Rocca, Giulia Gallerani, Ivan Vannini, Meropi Plousiou, Lorenzo Gerratana, Antonino Musolino, Giovanni Tallini, Giovanni Martinelli, Ugo De Giorgi, Paola Ulivi

“…Abstract The study of circulating tumor cells (CTCs) provides critical insights into the biological mechanisms underlying metastasis. …”
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Genomic and transcriptomic insights into the molecular responses of a biocrust-derived oleaginous microalga Vischeria sp. WL1 to nitrogen depletion and recovery by Xiaolan Rao, Wensheng Liang, Xin Jing, Chang Liu, Jiahong Li, Limei Liu, Xiang Gao

“…Comparative genomic and transcriptomic analyses identified a group of genes involved in nitrate metabolism and lipid accumulation. …”
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Characterization of the genome of a phylogenetically distinct tospovirus and its interactions with the local lesion-induced host Chenopodium quinoa by whole-transcriptome analyses. by Wan-Chen Chou, Shih-Shun Lin, Shyi-Dong Yeh, Siang-Ling Li, Ying-Che Peng, Ya-Hsu Fan, Tsung-Chi Chen

“…To reveal the whole genome of GCFSV and its interactions with C. quinoa, RNA-seq was performed to determine the transcriptome profiles of C. quinoa leaves. The high-throughput reads from infected C. quinoa leaves were used to identify the whole genome sequence of GCFSV and its single nucleotide polymorphisms. …”
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Transcriptomic Identification of Core Regulatory Genes for Higher Alcohol Production in <i>Saccharomyces cerevisiae</i> at Different Sugar Concentrations in Wine Fermentation by Lu Chen, Xiaona Ren, Yanan Wang, Dongshu Hao, Yanying Liang, Yi Qin

“…Transcriptome sequencing was employed to analyze differentially expressed genes at various fermentation stages, which resulted in the identification of the <i>GRE3</i> gene. …”
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Integrative analysis of metabolome and transcriptome reveals new insights into major quality formation and regulation in two strawberry cultivars with different fruit flavor by Lingzhi Wei, Huabo Liu, Yang Ni, Rong Xiong, Shuangtao Li, Rui Sun, Yongqing Wei, Hongli Zhang, Jing Dong, Linlin Chang, Chuanfei Zhong, Yuntao Zhang, Jian Sun, Guixia Wang, Yongshun Gao

“…In this study, we integrated the metabolome and transcriptome in two cultivars with remarkably different fruit quality. …”
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The Nearly Complete Genome of <i>Grifola frondosa</i> and Light-Induced Genes Screened Based on Transcriptomics Promote the Production of Triterpenoid Compounds by Yang Yang, Xuebo Hu

“…Phylogenetic analysis showed a close relationship between <i>G. frondosa</i> CH1 and <i>Trametes cinnabarina</i>. Transcriptomic analysis under varying light conditions showed changes in the expression of genes, especially those related to terpenoid synthesis, with several CAZymes and CYP450 genes also exhibiting light-induced variations. …”
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Transcriptome and 2-DE proteome analyses reveal defense-associated development in the leaf galls induced by psyllids on Machilus japonica var. kusanoi by Tin-Han Shih, Jian-Liang Chen, Meng-Yuan Huang

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Integrated Transcriptome and Metabolome Analysis Revealed Mechanism Underlying Anthocyanin Biosynthesis During Flower Color Formation in <i>Lagerstroemia indica</i> by Zilong Gao, Zhuomei Chen, Jinfeng Wang, Weixin Liu

“…In this study, we selected three different flower colors of <i>L. indica</i>—white (W), red (R), and purple (P)—for transcriptome and metabolome analysis. The metabolome analysis identified 538 flavonoids, with 22 anthocyanins highly accumulated in the red and purple flowers. …”
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Integrated Transcriptomic and Metabolomic Analyses Reveal Key Antioxidant Mechanisms in <i>Dendrobium huoshanense</i> Under Combined Salt and Heat Stress by Xingen Zhang, Guohui Li, Jun Dai, Peipei Wei, Binbin Du, Fang Li, Yulu Wang, Yujuan Wang

“…In this study, we focused on elucidating the physiological and molecular mechanisms underlying the response of <i>Dendrobium huoshanense</i> to combined salt and heat stress by integrating physiological, transcriptomic, and metabolomic analyses. Our results demonstrated that high temperature plays a dominant role in the combined stress response. …”
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No detectable impact of chronic oral lactic acid exposure on honey bee health: Insights from survival, lactate accumulation and head transcriptome by Caroline Vilarem, Vincent Piou, Lucie Bouly, Frédéric Julien, Rachel Fourdin, Nathalie Vialaneix, Matthias Zytnicki, Angélique Vétillard

“…While further research on sublethal effects is still needed, this work provides one of the first reports on the off-target effects of lactic acid on honey bee health.…”
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Integrated Metabolomic and Transcriptomic Analysis of Volatile Organic Compound Biosynthesis During Mung Bean (<i>Vigna radiata</i>) Seed Development by Nan Xiang, Yihan Zhao, Bing Zhang, Honglin Chen, Xinbo Guo

“…Transcriptomic analysis revealed four downregulated geranylgeranyl diphosphate synthase genes during seed development, leading to terpenoid accumulation patterns. …”
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Comparison of Transcriptome Differences in Scales of Two Closely Related Snake Species (<i>Lycodon rufozonatus</i> and <i>Lycodon rosozonatus</i>) by Ke Sun, Anqiong Lu, Yu Xu, Fei Zhu

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A first de novo transcriptome assembly of feijoa (Acca sellowiana [Berg] Burret) reveals key genes involved in flavonoid biosynthesis by Hector Oberti, Juan Gutierrez‐Gonzalez, Clara Pritsch

“…We then used this reference transcriptome to explore the expression profiling of key secondary metabolite genes. …”
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A Transcriptomic Study on the Toxic Effects of Iodide (I⁻) Wet Deposition on Pepper (<i>Capsicum annuum</i>) Leaves by Rui Yu, Zhu-Ling Ma, Min Wang, Jie Jin

“…Using sodium iodide (NaI) as the exposure agent, transcriptomic analysis was conducted to evaluate the molecular responses of chili pepper leaves to iodine at concentrations of 2, 4, and 8 ppm. …”
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Transcriptome Analysis of Large to Giant Congenital Melanocytic Nevus Reveals Cell Cycle Arrest and Immune Evasion: Identifying Potential Targets for Treatment by Boxuan Wei, Jieyu Gu, Ran Duan, Bowen Gao, Min Wu, Shengliang Zhou, Xiaolu Huang, Feng Xie

“…In conclusion, our research provides new perspectives for immunotherapy and targeted therapy.…”
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