Deep RNA sequencing of pectoralis muscle transcriptomes during late-term embryonic to neonatal development in indigenous Chinese duck breeds. by Chunhong Zhu, Weitao Song, Zhiyun Tao, Hongxiang Liu, Wenjuan Xu, Shuangjie Zhang, Huifang Li

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Metabolome and Transcriptome Analysis Reveals the Regulatory Effect of Magnesium Treatment on EGCG Biosynthesis in Tea Shoots (<i>Camellia sinensis</i>) by Zixuan Feng, Zhuan Li, Rui Yan, Nan Yang, Meichen Liu, Yueting Bai, Yuyuan Mao, Chengzhe Zhou, Yuqiong Guo, Yulin Zeng, Yuhang Ji, Yangshun Lin, Jiayong Chen, Shuilian Gao

“…This study elucidates the effect of magnesium nutrition on EGCG biosynthesis in tea plants and provides key candidate transcription factors to provide a reference for further research on high-EGCG tea varieties to improve tea quality.…”
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Floral organ development combined with pistil transcriptome analysis reveals the role of plant hormone signal transduction in the distyly of Primula vulgaris by Lu Zhang, Hantao Sun, Jianguo Feng, Yan Xu, Xuan Wang, Jinjie Cao, Feng Cao, Yanlong Wang, Jianbin Ma, Ping Li, Xiaoman Zhang

“…Based on flower organ observation results, a transcriptome analysis was conducted on the pistil at three different stages. …”
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High-resolution transcriptome analysis on a mouse model of neonatal hypoxic-ischemic encephalopathy using single-nucleus RNA-seq by Nao Wakui, Takashi Shimbo, Morifumi Hanawa, Tomomi Kitayama, Yukari Yamamoto, Yuya Ouchi, Kotaro Saga, Aiko Okada, Kazuya Mimura, Katsuto Tamai, Masayuki Endo

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RNA-seq analysis of blood from cave- and surface-dwelling Astyanax morphs reveal diverse transcriptomic responses to normoxic rearing by Tyler E. Boggs, Lydia R. Bucher, Joshua B. Gross

“…Collectively, this work provides new insights to the transcriptomic regulation of hypoxia tolerance using a cavefish model evolving in distinct oxygenated environments.…”
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Transcriptome sequencing reveals the expression profiles of lncRNAs and mRNAs in goat skin tissues with different types of wool coats by Peng Zhao, Hongyu Guo, Jieru Han, Zhiwu Wang, Yanrong Xue, Li Zhang

“…In this study, we collected skin tissues from two distinct coat types (CHLC_ESA and CHSC_ESA) of The Jinlan Cashmere Goat for transcriptome sequencing analysis. Our findings revealed 130 differentially expressed (DE) lncRNAs and 341 DE mRNAs. …”
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Cross one single body 49 tissues single-cell transcriptome reveals detailed macrophage heterogeneity during pig pregnancy by Xiaoyun Chen, Chenliang Lai, Liping Cai, Lusheng Huang

“…Our study provides a valuable resource for understanding macrophage diversity and tissue-specific macrophage adaptations during pregnancy in pigs.…”
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Combining whole genome and transcriptome sequencing to analyze the pathogenic mechanism of Diplodia sapinea blight in Pinus sylvestris var. mongolica Litv. by Ruiqi Wang, Yuting Wang, Sina Fu, Shixian Liao, Tingbo Jiang, Boru Zhou

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Integration of DNA Methylome and Transcriptome Analysis to Identify Novel Epigenetic Targets in the Acute Kidney Injury–Chronic Kidney Disease Transition by Xumin Zheng, Xinru Guo, Yuhao Chen, Kaiting Zhuang, Na Gong, Yifei Fu, Yanjun Liang, Yue Xu, Siyang Wang, Wenjuan Wang, Xiangmei Chen, Guangyan Cai

“…Treatment with DNA methyltransferase inhibitors mitigated fibrosis and improved lipid metabolism in the kidneys during AKI-CKD progression; (4) Conclusions: this study provides the first comprehensive epigenetic map of the AKI-CKD transition. …”
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48-Hour and 24-Hour Time-lapse Single-nucleus Transcriptomics Reveal Cell-type specific Circadian Rhythms in Arabidopsis by Yuwei Qin, Zhijian Liu, Shiqi Gao, Carlos Martínez-Vasallo, Yanping Long, Xinlong Zhu, Bin Liu, Ya Gao, Xiaodong Xu, Maria A. Nohales, Qiguang Xie, Jixian Zhai

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Transcriptome‑wide excavation and expression pattern analysis of the NAC transcription factors in methyl jasmonate- and sodium chloride-induced Glycyrrhiza uralensis by Yuan Li, Yue Shi, Zidong Zhu, Xiao Chen, Kuangwei Cao, Jiatong Li, Chunsheng Liu, Da Li

“…Comparative transcriptomic profiling by RNA sequencing (RNA-seq) revealed differentially expressed NAC TFs between MeJA/CK (Mock Control) and NaCl/CK. …”
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Temporal profiling of host transcriptome highlights time- and tissue-dependent Interferon pathway activation in NNV-infected European sea bass by Luca Peruzza, Giulia Dalla Rovere, Serena Ferraresso, Rafaella Franch, Daniela Bertotto, Francesco Pascoli, Gaia Bacchin, Anna Toffan, Luca Bargelloni

“…Here, we report on a time-course transcriptome analysis of brain and head kidney in NNV-infected bass that integrated the statistical evidence of differential expression with the information on temporal profiles (i.e. 6, 12, 24, 48, and 72 h post-infection (hpi)) compared to mock-infected controls. …”
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Lipid metabolism-mediated fertility decline in male mice exposed to Fluorene-9-bisphenol: An integrated DNA methylation and transcriptomics analysis by Danni Jiang, Yang Yang, Xiaojuan Han, Qianni Li, Yingxiu Ma, Jun Jiao, Lan Chao

“…Taken together, the results of this study provide a better understanding of the molecular mechanisms of toxicity effects induced by BHPF exposure from the perspective of methylome and transcriptome.…”
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Antibacterial mechanism of kojic acid and tea polyphenols against Escherichia coli O157:H7 through transcriptomic analysis by Yilin Lin, Ruifei Wang, Xiaoqing Li, Keren Agyekumwaa Addo, Meimei Fang, Yehui Zhang, Yigang Yu

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CircRNA-mediated ceRNA regulatory networks: transcriptomic insights into obesity type 2 diabetes progression and treatment strategies by Xian-Jie Zhen, Ren-tong Hu, Nan-Nan Liu, Jin-Fang Dou, Tao Wu, Yue-Lin Zhang, Chu-Yue Zhang, Li Ma, Guang-Jian Jiang

“…The study included 15 patients with O-T2DM and 15 healthy controls, and peripheral blood samples were collected for transcriptome analysis. The results showed that compared with the control group, there were 442 circRNAs and 2756 mRNAs with significant differential expression in the O-T2DM group. …”
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Inferring transcriptomic dynamics implicated in odor fatty acid accumulation in adipose tissue of Hulun Buir sheep from birth to market by Yechan Zhao, Zhangyan Li, Huimin Ou, Zhiliang Tan, Jinzhen Jiao

“…Abstract This study aimed to investigate the temporal accumulation of odor fatty acids (OFAs) in the dorsal subcutaneous adipose tissue, and uncover their dynamic regulatory metabolic pathways from the transcriptomic perspective in lambs from birth to market. …”
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Comparative Physiological and Transcriptome Analyses Reveal the Responses to Ocean Acidification Challenge of <i>Mactra veneriformis</i> with Different Shell Colors by Limei Chen, Gengyin Huang, Shuang Liang, Jian Liang, Hefeng Wang, Huiru Liu, Xiaoyu Wang, Li Li, Yongjun Guo, Wenguang Liu

“…In this study, oxygen consumption rate, ammonia excretion rate, and transcriptome sequencing of mantle tissue analyses were conducted in white and purple shell-color populations of <i>M. veneriformis</i> under OA stress (pH = 7.6). …”
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Integrated Metabolomics and Transcriptomics Analyses Identify Key Amino Acid Metabolic Mechanisms in <i>Lacticaseibacillus paracasei</i> SMN-LBK by Jie Shen, Yuyu Du, Yuechenfei Shen, Ning Kang, Zhexin Fan, Zhifeng Fang, Bo Yang, Jiancheng Wang, Baokun Li

“…Elucidating the molecular mechanisms of key amino acids in SMN-LBK will provide a theoretical foundation for understanding the differential fermentation of various proteins by lactic acid bacteria.…”
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Insights into intestinal barrier disruption during long-term gut Chlamydia colonization in mice: a single-cell transcriptomic approach by Ziqing Wan, Yicun Jiang, Sheng Xie, Jiao Wan, Youyou Huang, Luying Wang, Qi Zhang, Zengzi Zhou, Xin Sun, Chuqiang Shu, Chuqiang Shu, Tianyuan Zhang, Tianyuan Zhang, Qi Tian, Qi Tian

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Genetic basis of body color differences between local varieties of Cyprinus carpio: Insights from BSA-Seq and transcriptome analysis by Zhe Li, Luting Wen, Yong Lin, Zhong Chen, Junqi Qin, Xiaoqing Wang, Xuesong Du

“…By constructing an F₂ population and integrating histological examination, transmission electron microscopy, bulked segregant analysis (BSA-seq), and transcriptome analysis, we identified both phenotypic and molecular contributors to color variation. …”
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