Comparative transcriptome analysis reveals differences in immune responses to copper ions in Sepia esculenta under high-temperature conditions by Yancheng Zhao, Deyuan Chang, Yanxuan Zheng, Yuwei Zhang, Yongjie Wang, Xiaokai Bao, Guohua Sun, Yanwei Feng, Zan Li, Xiumei Liu, Jianmin Yang

“…In this study, we used transcriptomic techniques to investigate the differences in Cu exposure immune responses in S. esculenta larvae under different temperature conditions. …”
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Integration of whole genome resequencing and transcriptome sequencing to identify candidate genes for tall and short traits in Baicheng Fatty chickens by Jiaqi Li, Kaixu Chen, Mengting Zhu, Jingdong Bi, Honggang Tang, Weiyi Gao

“…Through the combined analysis of whole genome resequencing and transcriptome data, six intersecting genes were identified: KLF15, NRXN1, LOC107050638, MHCY11, HAO1, and BORCS6. …”
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Integrating the Transcriptome and Proteome to Postulate That TpiA and Pyk Are Key Enzymes Regulating the Growth of <i>Mycoplasma Bovis</i> by Fei Yang, Mengmeng Yang, Fan Liu, Yanrong Qi, Yanan Guo, Shenghu He

“…Transcriptomics and proteomics identified 193 DEGs and 158 DEPs, respectively, with significant differences in 49 proteins/34 transcriptomic CDS post-translational protein sequences (15 jointly up-regulated and 21 jointly down-regulated). …”
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Comparison of muscle structure and transcriptome analysis of eyed-side muscle and blind-side muscle in Cynoglossus semilaevis (Osteichthyes, Cynoglossidae) by Zhenming Lü, Yuzhen Wang, Jing Yu, Yijing Yang, An Xu, Li Gong, Jing Liu, Fenghui Li, Liqin Liu

“…Taken together, this study may provide useful information to understand the molecular mechanism of muscle development in flatfishes.…”
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Effects of Estrogen and Estrogen Receptors on Transcriptomes of HepG2 Cells: A Preliminary Study Using RNA Sequencing by Minqian Shen, Jingyi Cao, Haifei Shi

“…Collectively, these differentially expressed genes across HepG2 cell transcriptome involving cellular and metabolic processes by E2 and ER agonists provided mechanistic insight into protective effects of estrogens in HCC development.…”
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Identification of a deubiquitinating gene-related signature in ovarian cancer using integrated transcriptomic analysis and machine learning framework by Suwan Hu, Mengting Wang

“…Methods We conducted an integrated analysis of single-cell RNA sequencing and bulk transcriptome data from public databases. DUB genes were identified through Genecard database. …”
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A Strain Capable of Reducing Aflatoxin B1: Identification, Optimization of Removal Conditions and Transcriptomic Analysis of Degradation Pathways by WANG Lihui, PEI Yangyang, CHEN Xiaoru, ZHAO Huan, LIU Shuliang, HU Kaidi, ZHAO Ning, LI Qin, LI Jianlong

“…Transcriptomic results revealed that 525 genes were differentially expressed under the stress of AFB1, including 397 up-regulated and 128 down-regulated ones. …”
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Core transcriptome network modulates temperature (heat and cold) and osmotic (drought, salinity, and waterlogging) stress responses in oil palm by Fong Chin Lee, Wan-Chin Yeap, Shao Yong Kee, Harikrishna Kulaveerasingam, David Ross Appleton

“…To understand the core abiotic stress transcriptome (CAST) of oil palm, we performed RNA-Seq analyses of oil palm leaves subjected to drought, salinity, waterlogging, heat, and cold stresses. …”
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Transcriptomic insights into host transcriptional manipulation by ssDNA and ssRNA viruses in the marine planktonic diatom Chaetoceros tenuissimus by Yuki Hongo, Yuji Tomaru

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Ochratoxin A Degradation and Stress Response Mechanism of <i>Brevundimonas naejangsanensis</i> ML17 Determined by Transcriptomic Analysis by Zitong Zhao, Zehui Niu, Zhihong Liang

“…ML17 could almost completely degrade 12 μg/mL of OTA within 36 h, converting it into the non-toxic OTα and L-phenylalanine. Transcriptomic analysis showed that 275 genes were upregulated, whereas three genes were downregulated in ML17 under the stress of 1 μg/mL OTA. …”
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Decoding the Tissue-Specific Profiles of Bioactive Compounds in <i>Helvella leucopus</i> Using Combined Transcriptomic and Metabolomic Approaches by Qian Zhou, Xusheng Gao, Junxia Ma, Haoran Zhao, Dan Gao, Huixin Zhao

“…Transcriptomic analysis revealed a higher expression of genes involved in sterol biosynthesis (<i>ERG1</i>, <i>ERG3</i>, <i>ERG6</i>) and energy metabolism (<i>PGK1</i>, <i>ENO1</i>, <i>PYK1</i>) in the cap, suggesting a more active metabolic profile in this tissue. …”
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Mechanisms of asiaticoside in keloid treatment: Insights from a single-cell transcriptomic approach combined with network pharmacological analysis by Xiaobo Zhou, Li Lin, Canbin Dong, Jui-Ming Lin, Yiyi Gong, Wenyu Wu, Jia Huang

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Utilizing Microbial Inoculants to Alleviate Continuous Cropping Obstacles: Insights into the Metabolites and Transcriptomic Responses of <i>Pinellia ternata</i> by Xinyu Wang, Mohammad Murtaza Alami, Shuqi Gong, Qinglin Cheng, Chaoqun Chen, Xinghui Li, Shumei Zhong, Zhigang He, Dilin Chen, Shengqiu Feng, Shenghu Chen, Shaohua Shu

“…Correspondingly, transcriptomic analysis revealed the upregulation of phenylalanine ammonia-lyase (PAL) and other stress-related genes, confirming the metabolic shifts. …”
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Transcriptome Sequencing Reveals Survival Strategies and Pathogenic Potential of <i>Vibrio parahaemolyticus</i> Under Gastric Acid Stress by Shiying Ji, Jinlin Jiang, Zhiyong Song, Yu Zhou, Lu Chen, Shiying Tang, Yingjie Pan, Yong Zhao, Haiquan Liu

“…Interestingly, surviving <i>Vibrio parahaemolyticus</i> showed a significantly shorter growth lag time (LT) during recovery. Transcriptome sequencing (RNA-seq) analyses indicated that the bacteria adapted to gastric acid stress by regulating the two-component system through stress proteins secreted via the ribosomal pathway. …”
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Transcriptomic Characterization of the Porcine Urinary Bladder Trigone Following Intravesical Administration of Resiniferatoxin: Insights from High-Throughput Sequencing by Ewa Lepiarczyk, Mateusz Maździarz, Łukasz Paukszto, Agnieszka Bossowska, Mariusz Majewski, Jerzy Kaleczyc, Elżbieta Łopieńska-Biernat, Łukasz Jaśkiewicz, Agnieszka Skowrońska, Mariusz T. Skowroński, Marta Majewska

“…Resiniferatoxin (RTX), a potent capsaicin analog, is being investigated as a therapeutic agent for neurogenic conditions, particularly those affecting bladder control. However, the transcriptomic effects of RTX on the urinary bladder remain largely unexplored. …”
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Metabolic and Transcriptomic-Based Characterization of <i>Streptococcus salivarius</i> ssp. <i>thermophilus</i> Snew Fermentation in Milk by Ye Wang, Haijie Zhao, Huilin Zhang, Baochao Hou, Weilian Hung, Jian He, Chao Liang, Baolei Li, Chaoxin Man, Yujun Jiang, Yu Zhang, Ling Guo

“…<i>thermophilus</i> Snew-fermented milk, as well as transcriptomic and metabolomic analyses of different fermentation stages. …”
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A Comparative Transcriptomic Study Reveals Temporal and Genotype-Specific Defense Responses to <i>Botrytis cinerea</i> in Grapevine by Flavia Angela Maria Maggiolini, Annalisa Prencipe, Carlo Bergamini, Antonio Domenico Marsico, Marco Vendemia, Marika Santamaria, Maria Angela Giannandrea, Margherita D’Amico, Lucia Rosaria Forleo, Rocco Perniola, Riccardo Velasco, Maria Francesca Cardone

“…This study investigates transcriptomic responses to <i>B. cinerea</i> in tolerant and susceptible grapevine genotypes using RNA sequencing (RNA-seq). …”
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Transcriptomic and metabolomic analyses for the mechanism underlying anthocyanin synthesis during the growth and development of purple eggplant (Solanum melongena L) by Ting Yang, Wanping Lv, Runjie Zhuang, Shiyu Wang, Shuqi Fan, Yongxian Wen, Yongxian Wen

“…Metabolomic profiling identified anthocyanin types, while transcriptomic data highlighted differentially expressed genes. …”
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Transcriptome and Metabolome Analyses of Flavonoid Biosynthesis During Berry Development of Muscadine Grape (<i>Vitis rotundifolia</i> Michx) by Qiaofeng Yang, Changlin Li, Yan Wang, Xian Pei, Aixin Wang, Li Jin, Linchuan Fang

“…Two muscadine genotypes (Paulk and Supreme) were investigated via metabolomic and transcriptomic analysis during three developmental stages (bunch closure, veraison stage, and ripening stage). …”
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Mendelian randomization and transcriptomic analysis reveal a positive cause-and-effect relationship between Alzheimer's disease and colorectal cancer by Wei Du, Xueming Xia, Qiheng Gou, Yan Qiu

“…Conclusions: This study provides evidence of a causal relationship between AD and CRC, suggesting that shared genetic and inflammatory pathways may underlie both conditions. …”
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