Gibberellin Regulates LBD38-1 Responses to Xanthomonas arboricola pv. juglandis Infection in Walnut Bacterial Blight Pathogenesis by Wenqiang Dai, Yaoling Li, Zhenghan Chen, Fuqiang He, Hui Wang, Jiali Peng, Kai Liu, Hongxia Wang, Xiuhong An, Shugang Zhao

“…This function of JrLBD38-1 provides new insights into walnut disease resistance mechanisms.…”
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Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity by Sarah‐Maria Fendt, Joerg Martin Buescher, Florian Rudroff, Paola Picotti, Nicola Zamboni, Uwe Sauer

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Integrated transcriptome and co-expression network analysis revealed the molecular mechanism of cold tolerance in japonica rice at booting stage by Jiaqi Wang, Ning Chen, Jiaying Li, Chengxin Li, Guanzheng Fu, Fuying Liu, Hongqiang Zhao, Yingying Liu, Weihan Jiang, Tianyu Xia, Jie Chen, Hualong Liu, Hongliang Zheng, Luomiao Yang, Detang Zou, Jingguo Wang, Wei Xin, Wei Xin

“…This study provides novel insights into the molecular mechanisms of cold tolerance in rice and offers valuable targets for molecular breeding of cold-resistant cultivars.…”
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Regulation of Oxidative Stress-Related Signaling Pathways in <i>Tetrahymena pyriformis</i> Exposed to Micro- and Nanoplastics by Thavamani Rajapandi, Adewale Adeleke, Mintesinot Jiru

“…We also studied the impact of these particles on the transcriptomics of <i>T. pyriformis</i> and observed that PS-MPs directly impact various signaling pathways related to oxidative stress. …”
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Integrative analysis of transcriptome and metabolome reveals molecular mechanisms of dynamic change of storage substances during dehydration and drying process in peanuts (Arachis... by Jingjing Deng, Mingyu Hou, Shunli Cui, Yingru Liu, Xiukun Li, Lifeng Liu

“…Overall, this study provides valuable insights into the molecular regulation of storage compounds in peanut seeds and may help to assess edible peanuts that have enhanced nutritional and economic values.…”
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Multi-Omics Analysis of the Immune Effect of the Engineered Exosome Drug Delivery System in Inducing Macrophage Apoptosis by Wei Xiang, Zhoujun Zhu, Qisong Shang, Parhat Yasin, Yuanyuan Wu, Xinghua Song

“…After co-culturing with macrophages, transcriptomics and proteomics screened differentially expressed genes and proteins. …”
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Metabolomics combined with physiology and transcriptomics reveal the regulation of key nitrogen metabolic pathways in alfalfa by foliar spraying with nano-selenium by Pengbo Sun, Gentu Ge, Lin Sun, Jian Bao, Muqier Zhao, Junfeng Hao, Yuhan Zhang, Guoshun Liu, Zhijun Wang, Yushan Jia

“…In summary, this study provides a better understanding of the mechanisms by which nano-selenium regulates key nitrogen metabolic pathways in alfalfa. …”
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Using transcriptome sequencing (RNA-Seq) to screen genes involved in β-glucan biosynthesis and accumulation during oat seed development by Bing jie Qi, Ming xue Ji, Zhu qing He

“…We also studied the transcriptome sequencing of seeds at different filling stages. β-glucan accumulation was highest at days 6-16 in the filling stage. …”
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Physiological regulation underlying the alleviation of cadmium stress in maize seedlings by exogenous glycerol by Qiao Li, Chunda Niu, Jiaxu Guo, Geng Chen, Jingti Li, Lei Sun, Wei Li, Tianpu Li

“…These molecular patterns align with the observed physiological improvements. This study provided a novel approach to effectively alleviate excessive Cd in maize and suggested possible applications of glycerol in cultivating plant resistance to heavy metals.…”
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Identification and Functional Analysis of Key Genes Regulating Organic Acid Metabolism in Jujube Fruit by Panpan Tong, Dengyang Lu, Guanglian Liao, Cuiyun Wu, Jiangbo Wang

“…Transcriptome analysis identified nine genes associated with malic acid and seven with citric acid, with four genes co-regulating malic acid and citric acid. …”
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Integrative Analysis of Transcriptomic and Metabolomic Profiles Identifies Distinct Dynamic Changes in Primary and Secondary Metabolites in Grape Berries Under Fruit-Specific Light... by Xuan Luo, Jiahao Wu, Hongjuan Li, Xintong Wang, Wendi Wang, Hui Li, Kunfeng Li, Songling Bai

“…Conversely, light enhances secondary metabolites, such as flavonoids, and their associated gene expressions, maintaining consistent activation throughout development and leading to higher accumulation during maturation. This study provides the first transcriptomic and metabolomic characterization of grape berries exposed to fruit-specific light treatment, advancing our understanding of light-dependent fruit development and quality formation mechanisms.…”
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The pseudo-type response regulator gene Clsc regulates rind stripe coloration in watermelon by Dongming Liu, Jinfang Liang, Quanquan Liu, Yaxin Chen, Shixiang Duan, Dongling Sun, Huayu Zhu, Junling Dou, Huanhuan Niu, Sen Yang, Shouru Sun, Jianbin Hu, Luming Yang

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Neurotoxicity and Mechanism in Zebrafish Embryo Induced by Tetrabromobisphenol A bis (2-Hydroxyethyl) Ether (TBBPA-DHEE) Exposure by Xinyu Zhang, Liguo Guo, Yiwen Luo, Xia Xu, Ying Han, Hui Chen, Haohao Sun, Yingang Xue, Guixiang Ji

“…Additionally, TBBPA-DHEE increased oxidative stress in zebrafish. Transcriptomic analysis demonstrated that exposure to TBBPA-DHEE affected the signaling pathways involved in neurodevelopment. …”
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Heat shock transcription factors regulate thermotolerance gene networks in tomato (Solanum lycopersicum) flower buds by Hongwei Li, Yun Liu, Yongyao Li, Qinqin Yang, Tailai Yang, Zhi Zhou, Yafei Li, Na Zhang, Yaqing Lyu, Yingfang Zhu, Tao Lin

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Integrated transcriptomics and proteomics revealed that exogenous spermidine modulated signal transduction and carbohydrate metabolic pathways to enhance heat tolerance of lettuce by Yipei Duan, Wenjing Sun, Qian Wang, Lingling Cao, Huiyu Wang, Jinghong Hao, Yingyan Han, Chaojie Liu

“…These results increase the understanding of the heat tolerance of lettuce at the transcriptional and protein levels, and provide a better understanding of the heat tolerance mechanism of lettuce.…”
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A pan-crop metagenomic exploration of microbial communities linked to pesticide and xenobiotic degradation pathways in agricultural microbiomes by Ratna Prabha, Mahesh K. Samota, M. K. Verma, Shailendra Gupta, Anil Rai, S. C. Dubey, D. P. Singh

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Isolation and Identification of Alkaloid Genes from the Biomass of <i>Fritillaria taipaiensis</i> P.Y. Li by Nong Zhou, Chun-Mei Mei, Fu-Gui Chen, Yu-Wei Zhao, Ming-Guo Ma, Wei-Dong Li

“…Transcriptomic analysis revealed substantial significant differences in gene expression patterns in the various samples. …”
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Molecular mechanisms of benzophenone-induced toxicity in marine diatoms: Insights from Chaetoceros neogracilis by Jing Yang, Huo Xu, Ziying Li, Zhimeng Xu, Sidney Man Ngai Chan, Yi Yang, Keng Po Lai

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A triterpene-enriched natural extract from Eucalyptus tereticornis modulates the expression of genes involved in adipogenesis, lipolysis, and extracellular matrix remodeling in a p... by Sergio Acin, Alejandro Mejia-Garcia, Geysson Javier Fernandez, Norman Balcazar

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Transcriptome and weighted gene co-expression network analysis of jujube (Ziziphus jujuba Mill.) fruit reveal putative genes involved in proanthocyanin biosynthesis and regulation by Wenqiang Wang, Yunfeng Pu, Hao Wen, Dengyang Lu, Min Yan, Minzhe Liu, Minyu Wu, Hongjin Bai, Lirong Shen, Cuiyun Wu

“…The results of qRT-PCR analysis validating 10 genes were well consistent with the transcriptome data. These findings provide valuable knowledge to facilitate its genetic studies and molecular breeding.…”
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