Single-cell transcriptomic reveals the peritoneal microenvironmental change in long-term peritoneal dialysis patients with ultrafiltration failure by Xiangwen Diao, Cuixia Zhan, Hongjian Ye, Haishan Wu, Chunyan Yi, Jianxiong Lin, Haiping Mao, Wei Chen, Xiao Yang

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Transcriptome analysis reveals key regulatory networks and genes involved in the acquisition of cold stress memory in pepper seedlings by Jian Li, Ping Yang, Hongbo Fu, Juan Li, Yanzhuang Wang, Keyan Zhu, Jihua Yu, Jie Li

“…Currently, there are no studies on transcriptomic analysis of ‘cold stress memory’ in pepper. …”
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Transcriptome profiling identifies differentially expressed genes in Huoyan goose ovaries between the laying period and ceased period. by Xinhong Luan, Dawei Liu, Zhongzan Cao, Lina Luo, Mei Liu, Ming Gao, Xiaoying Zhang

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Meta-Analysis of Wild Relatives and Domesticated Species of Rice, Tomato, and Soybean Using Publicly Available Transcriptome Data by Makoto Yumiya, Hidemasa Bono

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Microbial-transcriptome integrative analysis of heat stress effects on amino acid metabolism and lipid peroxidation in poultry jejunum by Young-Jun Seo, Chiwoong Lim, Byeonghwi Lim, Jun-Mo Kim

“…This integrated approach provides novel insights into heat stress problems and identifies potential biomarkers associated with heat stress.…”
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Integrating Single‐Cell Transcriptomics and Machine Learning to Define an ac4C Gene Signature in Lung Adenocarcinoma by Yuan Wang, Wei Su, Guangyao Zhou, Yijie Wang, Chunnuan Wu, Pengpeng Zhang, Lianmin Zhang

“…Methods This study analyzed transcriptomic and single‐cell RNA sequencing data from public databases to investigate the expression and clinical significance of ac4C‐related genes in lung adenocarcinoma. …”
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Integrating transcriptome and metabolome analyses to characterize flower development in Salix variegata franch., a typical dioecious plant by Huan Zhang, Wenqiao Li, Xiao Zhang, Rui Pan, Mingwei Tang, Yang Peng, Yiyun Wang, Youwei Zuo, Zhe Zhang, Hongping Deng

“…These results provide important insights to elucidate the development of male and female flowers of S. variegata at the molecular level. …”
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Transcriptomic landscape around wound bed defines regenerative versus non-regenerative outcomes in mouse digit amputation. by Archana Prabahar, Connie S Chamberlain, Ray Vanderby, William L Murphy, William Dangelo, Kulkarni Mangesh, Bryan Brown, Barsanjit Mazumder, Stephen Badylak, Peng Jiang

“…Unraveling the molecular mechanisms underlying this disparity could provide crucial insights for regenerative medicine. …”
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Integrated transcriptomic and metabolomic analysis of the antibacterial mechanism of Rhizoma Coptidis extract against Staphylococcus epidermidis ATCC 35984 by Lizhuang Wang, Yan Xing, Shuai Yang, Huan Zhang, Laiji Ma, Li Shao

“…Anti-biofilm activity was further confirmed using scanning electron microscopy and confocal laser scanning microscopy. Transcriptomic and metabolomic analyses identified significant changes in 366 genes and 286 metabolites after treatment. …”
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Single-cell RNA transcriptome analysis reveals regulatory programs of RNA binding proteins in diabetic foot ulcers by Qiong Hu, Lei Liu, Jie Pei, Yiting Yan, Yujie Chen, Songtao Tang

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Liver transcriptome analysis reveals the molecular response to hibernation challenge in the Chinese soft-shelled turtle (Pelodiscus sinensis) by Muhammad Shahid Iqbal, Xiaoqi Ai, Qingjun Zhu, Ijaz Khan, Zeeshan Ali, Tian Lan, Li Ding, Meiling Hong

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The Mechanism of Seed Priming with Abscisic Acid for Enhancing Cuticle Deposition Under Drought Stress: Phenotypic and Transcriptomic Insights by Luhua Yao, Sennan Li, Nana Zhou, Yanjun Guo

“…Transcriptomics identified 921 differentially expressed genes, including key fatty acid biosynthesis genes (ADH2, DES2, KAS2). …”
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Comparative genomic and transcriptomic analyses of LNCaP and C4-2B prostate cancer cell lines. by Lien Spans, Christine Helsen, Liesbeth Clinckemalie, Thomas Van den Broeck, Stefan Prekovic, Steven Joniau, Evelyne Lerut, Frank Claessens

“…Integration of these pathways converges on the myosin light chain kinase gene (MLCK) which might contribute to the metastatic potential of C4-2B cells. In conclusion, we provide extensive databases for mutated genes and differentially expressed genes in the LNCaP and C4-2B prostate cancer cell lines. …”
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Hepatocyte reporter cells and integrated metabolomic and transcriptomic analyses reveal insights into hepatocyte changes in offspring of pregnancies with obesity by Svetlana Y. Kozlovich, Amy Y. Pan, Jennifer J. McIntosh, Anna Palatnik, Shuang Jia, Martin J. Hessner, T. Hang Nghiem-Rao

“…We integrated metabolomic analysis of umbilical cord plasma and transcriptomic analysis of cord plasma-exposed hepatocytes to examine differences in the intrauterine environment of pregnancies with and without maternal obesity. …”
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Gonadal transcriptome analysis reveals MAG participates in ovarian suppression of intersex red claw crayfish (Cherax quadricarinatus) by Honglin Chen, Miaofeng Ouyang, Huan Zhou, Fangfang Liu, Huiyi Cai, Bao Lou

“…Conclusions Our research suggesting MAG participates in the IAG regulated ovarian suppression in the intersex red claw crayfish, which provides important information on the regulatory mechanism of the ovarian dysplasia in the ovotestis of intersex red claw crayfish. …”
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Integrated physiological, transcriptomic and metabolomic analysis of the response of Brassica napus L. to pruning residues from tea plant by Min Cai, Xu Zhang, Zheng Feng, Xinzhuan Yao, Litang Lu, Yujie Jiao, Weidong Wang

“…This study was combined physiology, transcriptomics, and metabolomics to analyze the effects of uncomposted and composted tea plant branches (UT and CT, respectively) on seed germination and seedling growth of Brassica napus L. …”
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Uncovering Hippo pathway-related biomarkers in acute myocardial infarction via scRNA-seq binding transcriptomics by Xingda Li, Xueqi He, Yu Zhang, Xinyuan Hao, Anqi Xiong, Jiayu Huang, Biying Jiang, Zaiyu Tong, Haiyan Huang, Lian Yi, Wenjia Chen

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Transcriptome Profiles of the Liver in Two Cold-Exposed Sheep Breeds Revealed Different Mechanisms and Candidate Genes for Thermogenesis by Dan Jiao, Kaixi Ji, Wenqiang Wang, Hu Liu, Jianwei Zhou, A. Allan Degen, Yunsheng Zhang, Ping Zhou, Guo Yang

“…In this study, the difference in the liver transcriptome between Altay and Hu ewe lambs was compared. …”
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Transcriptomic Profiling Reveals Regulatory Pathways of Tomato in Resistance to Verticillium Wilt Triggered by VdR3e by Xiao Wang, Qian Tan, Xiyue Bao, Xinyue Gong, Lingmin Zhao, Jieyin Chen, Lei Liu, Ran Li

“…We confirmed that VdR3e triggers immune responses in the parents of IVF6384 plants and conducted transcriptome sequencing between male and female IVF6384 plants after VdR3e infiltration to analyze the potential regulatory network response to VdR3e. …”
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Transcriptomics reveals creatine regulation of ovarian development at low temperature in Chinese soft-shelled turtles (Pelodiscus sinensis) by Guoyin Zhang, Xi He, Yulong Li, Jiazhen Wu, Guoying Qian, Zhongfa Chen, Caiyan Li, Wei Wang

“…Transcriptome analysis identified 4355 differentially expressed genes in the liver. …”
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