A deep insight into the sialome of the house fly, Musca domestica, infected with the salivary gland hypertrophy virus (MdSGHV) by Stephen Lu, Noa Miller, Adrian Wilson, Christopher J. Geden, John G. Stoffolano, Jose M. C. Ribeiro

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Integrative transcriptomic and metabolomic analysis elucidates the vital pathways underlying the differences in salt stress responses between two chickpea (Cicer arietinum L.) vari... by Guangxia Duan, Chaoni Liang, Jundong Su, Yan Liang, Wanming Li, Jinbo Zhang, Yigong Zhang

“…Results The present study analyzed the transcriptomic and metabolomic profiles of two distinct chickpea varieties, DY3 and DY1, with contrasting salinity tolerance capacities. …”
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Sll1725, an ABC transporter in Synechocystis sp. PCC 6803 for the detoxification of cadmium ion stress by Gang Ruan, Changzi Liu, Gaofei Song, Jing Qian, Tao Bao, Yafei Zhao, Shaoqiang Sun, Dong Wan, Wujuan Mi, Man He, Bin Hu, Yonghong Bi

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Integrated Transcriptome and Microbiome Analyses Reveal Growth- and Stress-Response-Related Genes and Microbes in Mandarin Fish (<i>Siniperca chuatsi</i>) by Fan Zhou, Wei Liu, Ming Qi, Qianrong Liang, Gaohua Yao, Cheng Ma, Xueyan Ding, Zaihang Yu, Xinyu Li, Zhanqi Wang

“…In this study, we integrated transcriptome and microbiome analyses to investigate adaptations across three geographically distinct mandarin fish groups: Guangdong (G), Qiupu (Q), and native Taihu (T). …”
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Inhibitory Activity and Transcriptional Mechanism of PostbioYDFF against Pseudomonas aeruginosa by Yuqian LIU, Ming WANG, Wei YUAN, Jinhong ZANG, Jinshan ZHAO, Zhaojie LI, Ruiyan HU, Chuantao PENG

“…In the present study, the antibacterial activity of postbiotics PostbioYDFF against Pseudomonas aeruginosa (P. aeruginosa) and its mechanism of action were examined by analyzing its effects on biofilm formation and changes in the ultrastructure and transcriptome. Meanwhile, to validate transcriptome data, qPCR was conducted. …”
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Potential threat of environmental toxin palytoxin to cerebral nerves: A mechanism study in vitro and in vivo by Xue Zhang, Lei Huang, Yinliang Liu, Xuewen Li, Huanying Zhou, Kang Qin, Shuang Li, Shuyue Ren, Xuexia Jia, Zhixian Gao

“…Chronic exposure to PTX was shown to damage mammalian cerebral nerves, carrying a potential risk for neurodegenerative diseases. Our study provides insights into the environmental and health risks associated with PTX exposure and offers a foundation for risk assessment and intervention strategies.…”
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Screening of functional genes affecting the quality of translucent eggshell membranes based on RNA-seq analysis and DIA proteomics by Chun-Hao Han, Xiao-Yu Zhao, Chuan-Wen Wang, Li-Jun Xu, Hua-Ge Liu, Hui Chen, Rong-Yan Zhou, De-He Wang

“…Combined proteomics and transcriptomics analysis identified 42 differentially expressed proteins and genes, including candidate genes such as CA2, LUZP2, OVA, OVALY, OVST, and AVBD11. …”
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Transcriptome and Metabolome Combined Analysis Reveals Key Genes Controlling Soluble Sugar Metabolism in Persimmon Fruit During Development by Sichao Yang, Meng Zhang, Ming Zeng, Lei Xu, Chaohua Zhou, Xinlong Hu

“…Overall, this study provides valuable insights into the metabolism pattern of high sugar accumulation in persimmon fruit.…”
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Biosynthesis of Camphane Volatile Terpenes in <i>Amomum villosum</i> Lour: Involved Genes and Enzymes by Yuhua Guo, Yamei Li, Pengfei Zhang, Zuliang Luo, Junmei Yin, Xiaojun Ma, Chao Yuan

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From spore to gametophyte: Investigating morphological dynamics of hyaline cells and corresponding gene expression patterns in Sphagnum by Xianlin Guo, Fumin Xie, Chaojie Wang, Kai Fang, Dan Xue, Liangfeng Liu, Xinwei Liu, Xiaohan Yang, Yuchen Huang, Tianyao Han, Huai Chen

“…Results During the transition from spore germination to mature gametophytes, significant morphological changes occur in the cell walls of hyaline cells, particularly their increased volume, which distinguishes them from chlorophyllous cells. Transcriptomic analyses revealed marked changes in gene expression related to the cell wall, apoplast, and extracellular regions during hyaline cell formation. …”
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Dietary protein requirement of Chinese hook snout carp (Opsariichthys bidens) and transcriptomic analysis of the liver in response to different protein diets by Yijiang Bei, Linqiang He, Jin Jing, Xiaoming Chen, Fan Yuan, Gaohua Yao, XueYan Ding, Lei Wang, Fan Zhou

“…DEGs associated with nutrient metabolism and immune responses provide insights for optimizing protein levels in aquaculture feed formulations. …”
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Comparative Analysis of ICS Combined with LABA versus Addition of Omalizumab on Transcriptomic Expression Profiles in Patients with Allergic Asthma by Liang YR, Chang CH, Huang SY, Wu YK, Yang MC, Huang KL, Tzeng IS, Hsieh PC, Lan CC

“…For patients unresponsive to ICS with LABA, omalizumab may be added to improve asthma control. Understanding transcriptomic expressions is crucial as it provides insights into the molecular mechanisms underlying treatment. …”
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Gene expression profiling identifies molecular pathways associated with collagen VI deficiency and provides novel therapeutic targets. by Sonia Paco, Susana G Kalko, Cristina Jou, María A Rodríguez, Joan Corbera, Francesco Muntoni, Lucy Feng, Eloy Rivas, Ferran Torner, Francesca Gualandi, Anna M Gomez-Foix, Anna Ferrer, Carlos Ortez, Andrés Nascimento, Jaume Colomer, Cecilia Jimenez-Mallebrera

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Multiomic Analysis Provided Insights into the Responses of Carbon Sources by Wood-Rotting Fungi <i>Daldinia carpinicola</i> by Peng Yang, Xingchi Ma, Yu Zhang, Yanan Sun, Hao Yu, Jiandong Han, Meng Ma, Luzhang Wan, Fansheng Cheng

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The near-complete genome assembly of Ampelopsis grossedentata provides insights into its origin, evolution, and the regulation of flavonoid biosynthesis by Zhi Yao, Zhi Yao, Zhi Feng, Zhi Feng, Fuwen Wu, Fuwen Wu, Peiling Zhang, Peiling Zhang, Qiye Wang, Binling Ai, Yiqiang Wang, Yiqiang Wang, Meng Li, Meng Li

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Integrative phenomics, metabolomics and genomics analysis provides new insights for deciphering the genetic basis of metabolism in polished rice by Hui Feng, Yufei Li, Guoxin Dai, Zhuang Yang, Jingyan Song, Bingjie Lu, Yuan Gao, Yongqi Chen, Jiawei Shi, Luis A. J. Mur, Lejun Yu, Jie Luo, Wanneng Yang

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The male and female genomes of golden pompano (Trachinotus ovatus) provide insights into the sex chromosome evolution and rapid growth by Honglin Luo, Yongde Zhang, Fuyan Liu, Yongzhen Zhao, Jinxia Peng, Yuhui Xu, Xiuli Chen, Yin Huang, Changmian Ji, Qingyun Liu, Pingping He, Pengfei Feng, Chunling Yang, Pinyuan Wei, Zhenhua Ma, Jianguang Qin, Shengjie Zhou, Shiming Dai, Yaoyao Zhang, Zhongquan Zhao, Hongling Liu, Hongkun Zheng, Jisen Zhang, Yong Lin, Xiaohan Chen

“…Conclusion: This study provides insights into sex chromosome evolution, sex determination and rapid growth of golden pompano.…”
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Eucalyptus grandis WRKY genes provide insight into the role of arbuscular mycorrhizal symbiosis in defense against Ralstonia solanacearum by Jianlang Zhang, Xinzhu Yang, Chunyu Huo, Xinyi Fan, Qiutong Liu, Zhihong Liu, Yu Su, Zujing Chen, Zujing Chen

“…All subfamilies (except for group IV-b and IV-c) contain AW-boxes, which are related to mycorrhizal induction. Furthermore, transcriptomic analysis revealed that 21 EgWRKYs were responsive to the AMF Ri, with 13 and 8 genes strongly up- and downregulated, respectively. …”
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Mapping immunotherapy potential: spatial transcriptomics in the unraveling of tumor-immune microenvironments in head and neck squamous cell carcinoma by Seo-Won Choi, Jeong Heon Kim, Jisu Hong, Minsu Kwon

“…To address these challenges and enhance the therapeutic potential of ICIs in HNSCC, a comprehensive analysis of the TIME is essential. Spatial transcriptomics (ST), a cutting-edge technology, enables high-resolution mapping of gene expression within the spatial context of the tumor, providing critical insights into the functional roles and interactions of immune cells in the TIME. …”
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Desert-adapted tomato Solanum pennellii exhibit unique regulatory elements and stress-ready transcriptome patterns to drought. by J Sebastián Contreras-Riquelme, Miguel Contreras, Tomas C Moyano, Rachid Sjoberg, José Jimenez-Gomez, José M Alvarez

“…Through RNA-seq analysis, we identified orthologous genes between the two species and compared their transcriptomic profiles under both control and drought conditions. …”
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